Pairwise Alignments

Query, 1149 a.a., transcription-repair coupling factor from Pseudomonas simiae WCS417

Subject, 1198 a.a., transcription-repair coupling factor Mfd from Dechlorosoma suillum PS

 Score = 1155 bits (2987), Expect = 0.0
 Identities = 611/1145 (53%), Positives = 793/1145 (69%), Gaps = 16/1145 (1%)

Query: 6    LPLLPAAAGKQHWGNLPGAALSLAIAEAASAA---KRFTLLLTADSQSAERLEQELSFFA 62
            L  LP +  + H   L G+A +LA+A   S A   KR   +LTA    A+RL +E+ +FA
Sbjct: 62   LAQLPRSGERLHLPPLAGSADALALARLGSQARSQKRLLAVLTASPADAQRLLEEIPWFA 121

Query: 63   PDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELAHGVLVVPITTALHRLAPTKF 122
            PDL V   PDWETLPYD FSPH D++S+R+A+LY +      VL+VP TTA++RL P  +
Sbjct: 122  PDLKVRLLPDWETLPYDNFSPHHDLVSERLATLYAVSRGECEVLLVPATTAVYRLTPPSY 181

Query: 123  LLGSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYRI 182
            L   +  L  G+KLD EQ R++L  +GY  V  V   GE+++RG L+DLFPMGS LPYRI
Sbjct: 182  LAAYTFFLKKGEKLDAEQFRSQLTLAGYTHVTQVVSPGEYSIRGGLVDLFPMGSALPYRI 241

Query: 183  DLFDDEIETLRTFDPENQRSIDKVDSVKLLPAREFPLQKDAVTRFKARFRERFDVDFRRC 242
            DLFD+EIETLRTFD + QRS+  V  ++LLPAREFPL     TRF+ RFRE F+ D  + 
Sbjct: 242  DLFDEEIETLRTFDADTQRSLYPVPEIRLLPAREFPLDDGGRTRFRQRFREVFEGDPAKS 301

Query: 243  PIFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRNRY 302
             I++D+S+G+  AGIEY+LPLFF+ET+TLFDYLP+D  +     +  A ++FW D ++RY
Sbjct: 302  GIYKDVSNGVPSAGIEYWLPLFFEETATLFDYLPKDAVLCQHRDVALALQDFWRDTQSRY 361

Query: 303  EERRVDPSRPLLPPAELFLPVEDCFARLKSWPRVVASQQDVETGAGRERFP--AATLPDL 360
                 D +RPLLPPAELFL  E  F   K + +++        G   E  P  A  +P +
Sbjct: 362  NMLAGDKARPLLPPAELFLSEEQFFVAAKDYAKLIL-------GTPAEGMPPLATAVPTV 414

Query: 361  AIQAKATQPLEALSNFLGDFPGR-VLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVK 419
            A++ +A  PL AL  F+    GR  L  AESAGRRE L +LL    L+P     +  F+ 
Sbjct: 415  AVERRAEDPLTALKQFIAGRQGRRTLLLAESAGRRETLQQLLLEHGLKPAASADFAAFLG 474

Query: 420  SKERLAITIAPLDEGLLLDDPALALIAESPLFGQRVMQRRRREKRADANNDAVIKNLTEL 479
                LA+ +APL  G  LD   LA+I E+ L+     +R R+  +  A+ D  +++LTEL
Sbjct: 475  GDAPLALGVAPLQSGFCLD--GLAIITETELYAGSPNRRSRQNAQRRASMDNWLRDLTEL 532

Query: 480  REGAPVVHIDHGVGRYLGLQTLEIDNQAAEFLTMEYAEGAKLYVPVANLHLIARYTGSDD 539
            + G PVVH  HG+GRY+GL  L++     EFL + YA  AKLYVPV+ LH+I+RY+G++ 
Sbjct: 533  KVGDPVVHESHGIGRYMGLLHLDLGEGDTEFLELHYANEAKLYVPVSQLHVISRYSGNEP 592

Query: 540  ALAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGF 599
              APLH LGS  W+KAK+KAAEQ RD AAELL +YA RAAR+G+AFA  + DY  F+ GF
Sbjct: 593  DAAPLHSLGSGQWEKAKKKAAEQARDTAAELLALYAARAARQGHAFAFTENDYEAFADGF 652

Query: 600  AFEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVP 659
             FEET DQ T I AV  DM + KPMDRLVCGDVGFGKTEVA+RAAF+AV GGKQVA+L P
Sbjct: 653  GFEETEDQATAIAAVIEDMKSGKPMDRLVCGDVGFGKTEVALRAAFVAVAGGKQVAVLCP 712

Query: 660  TTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAIADLAEGKIDIVIGTHKLLSDD 719
            TTLL +QHY +F+DRFADWPV +  +SRFK+AKE   A+ DL  GKIDIVIGTHKLLS +
Sbjct: 713  TTLLCEQHYQTFKDRFADWPVQIAELSRFKTAKETAQAMKDLEAGKIDIVIGTHKLLSKE 772

Query: 720  VKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIA 779
            +K   LGLV+IDEEHRFGVRQKE LKALR+EVD+LTLTATPIPRTL M++ G+RD S+IA
Sbjct: 773  MKFDRLGLVMIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLAMSLEGLRDFSVIA 832

Query: 780  TPPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEAR 839
            T P +RL+++TFV + +   ++EA+LREL RGGQVY+LHN+V TI+     L  LVPEAR
Sbjct: 833  TAPQKRLAIKTFVAKFSDGIIREAVLRELKRGGQVYFLHNEVDTIDNMREKLQSLVPEAR 892

Query: 840  IAIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLH 899
            I +GHGQM ERELE+VM DF  +R N+L+ +TIIETGID P ANTI+I RA+KFGLAQLH
Sbjct: 893  IVVGHGQMNERELERVMRDFTQQRANLLLCTTIIETGIDNPHANTILINRAEKFGLAQLH 952

Query: 900  QLRGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGE 959
            QLRGRVGRSHHQAY+YLL    + +T  A++RLEAI + ++LGAGF LA +DLEIRGAGE
Sbjct: 953  QLRGRVGRSHHQAYSYLLVQDEKALTKQAKQRLEAIQHMEELGAGFYLAMHDLEIRGAGE 1012

Query: 960  LLGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRLPALIPEEYL 1019
            +LG+ QSG++Q VGF LY EML RAV A+++G +P+L QPLG   EINL  PAL+P+ Y 
Sbjct: 1013 VLGENQSGEMQEVGFNLYTEMLNRAVAALKQGREPDLTQPLGVTTEINLHAPALLPDAYA 1072

Query: 1020 PDVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQAEQLGIKK 1079
            PDVH RL LYKR+++   EE +  LQ E+IDRFG LP   + L+    L+L A  LGI K
Sbjct: 1073 PDVHERLTLYKRLSNCETEEDINALQEELIDRFGELPPQGQCLLATHRLRLLARPLGIVK 1132

Query: 1080 VDAGPQGGRIEFEAQTPVDPLVLIKLIQGQPNRYKFEGATLFKFMVPMERAEERFNTLEA 1139
            +DA      ++F    P++P+ +I+LIQ +   +K  G      +  M   +ER + ++ 
Sbjct: 1133 LDATASQLTVQFCPNPPIEPIRIIELIQ-KNRHFKLAGQDKLAVVRHMPTLKERVDAVKD 1191

Query: 1140 LFERL 1144
            LF +L
Sbjct: 1192 LFRQL 1196