Pairwise Alignments

Query, 1149 a.a., transcription-repair coupling factor from Pseudomonas simiae WCS417

Subject, 688 a.a., ATP-dependent DNA helicase RecG (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  233 bits (594), Expect = 4e-65
 Identities = 146/387 (37%), Positives = 210/387 (54%), Gaps = 19/387 (4%)

Query: 595 FSAGFAFEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQV 654
           F     F+ T  QQ  +  +  D+  P PM RLV GDVG GKT VA  AA  A+  G QV
Sbjct: 256 FLTSLPFKPTGAQQRVVAEIGKDLAQPHPMMRLVQGDVGSGKTLVAALAALQAIENGYQV 315

Query: 655 AILVPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAIADLAEGKIDIVIGTHK 714
           A++ PT LLA+QH  +F   F    + V  ++     K    ++AD+  G   IVIGTH 
Sbjct: 316 AMMAPTELLAEQHAANFAAWFEPLGLKVGWLAGKLKGKARAQSLADIESGAAQIVIGTHA 375

Query: 715 LLSDDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDI----LTLTATPIPRTLNMAVS 770
           +    V    L L+IIDE+HRFGV Q+  L+            L +TATPIPRTL M   
Sbjct: 376 IFQQQVIFHKLALIIIDEQHRFGVHQRMGLREKGINQGFHPHQLIMTATPIPRTLAMTAY 435

Query: 771 GMRDLSII-ATPPARRLSVRTFVMEQNKSTVKEALLRELLRG-GQVYYLHN--------D 820
              D SII   PP R       + +  ++ V E +   ++    Q Y++          +
Sbjct: 436 ADLDTSIIDELPPGRTPVTTVAIPDSRRNEVLERVRNSVITDKRQAYWVCTLIEESEVLE 495

Query: 821 VKTIEKCAADLAELVPEARIAIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVP 880
            +  E  A +L + +PE  I + HG+M+  E +++M+DF     N+L+A+T+IE G+DVP
Sbjct: 496 CQAAEDTAEELRQALPELTIGLVHGRMKSAEKQKIMADFKAGTINLLVATTVIEVGVDVP 555

Query: 881 SANTIIIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEAIANTQD 940
           +++ +IIE  ++ GLAQLHQLRGRVGR    ++  LL   +  ++  A +RL  +  + D
Sbjct: 556 NSSLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLY--KAPLSQTASQRLNVLRQSND 613

Query: 941 LGAGFVLATNDLEIRGAGELLGDGQSG 967
              GFV+A  DLEIRG GE+LG  Q+G
Sbjct: 614 ---GFVIAQKDLEIRGPGEVLGTKQTG 637