Pairwise Alignments

Query, 1149 a.a., transcription-repair coupling factor from Pseudomonas simiae WCS417

Subject, 1160 a.a., transcription-repair coupling factor (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  649 bits (1675), Expect = 0.0
 Identities = 414/1153 (35%), Positives = 631/1153 (54%), Gaps = 49/1153 (4%)

Query: 23   GAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSFFAPDLPV----LHFPDWET--- 75
            G A +  +  A   A R  +++  D++        L+ F+PD       L  P WE+   
Sbjct: 25   GMATAARLGNAVLDAGRSAVMVVRDAEELALARGLLTLFSPDASAGDSPLVKPRWESRWV 84

Query: 76   -LP-YDLFSPHQDIISQRIASLYRLPE--LAHGVLVVPITTALHRLAPTKFLLGSSLVLD 131
             +P + L + ++D  + R+A+L+ L +  +  GVL+  +   L +L P        L L 
Sbjct: 85   VMPQHPLGARNRDAWASRMAALFALGQKRVPQGVLIT-VDNFLSKLPPADLFASHELTLA 143

Query: 132  IGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYRIDLFDDEIET 191
             G ++  E +  +    G+  V  V   GE AVRG ++D++P G + P R++ F + +E 
Sbjct: 144  CGDEMAPELVLEQAVDWGFDRVQMVSRPGEIAVRGDIVDIYPPGYERPLRLEFFGETLEE 203

Query: 192  LRTFDPENQRSIDKVDSVKLLPAREFPLQKDAVTRFKARFRERFDVDFRRCPIFQDLSSG 251
            +R FD  NQRS+ K+D + LLP     L  +  ++  AR++  F         +  L  G
Sbjct: 204  IRLFDASNQRSLGKLDEMVLLPVSPVVLSAELRSKATARWKRLFSKGMLTEEQYAGLLRG 263

Query: 252  ITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQ------AAENFWNDVRNRYEER 305
            I   G       +++  + + ++LP+D   + LPG ++      AA+  W  + ++  E 
Sbjct: 264  IERHGEGLMPGAYYEAPTVVEEWLPRDA-AWILPGRKELVDAVEAAQQNWEALFDKQAEE 322

Query: 306  ------RVDPSRPLLPPAELFLPVEDCFAR--LKSWPRVVASQQDVETGAGRERFPAATL 357
                  R    R   P  +L+   +       +    R      + +     + FPA   
Sbjct: 323  GGARQPRGLVLRDAAPVRQLYEEKDSAGFEPLVMGVERTGVDMPERKLHGFVDLFPAPDA 382

Query: 358  PDLAIQAKATQPLEALSNFLGDFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDF 417
             D   QA        L  F+      +L      GRR+  L+L E+  + P T+   P  
Sbjct: 383  RDRPWQALVA----GLHRFVATHARVLLCFGNERGRRK-FLKLAEQDGITP-TLRYDP-- 434

Query: 418  VKSKERLAITIAPLDEGLLLDDPALALIAESPLFGQRVMQRRRREKRADANNDAVIKNLT 477
             K +  +A+ +AP   G+ L      +I E  L       +  R  R  +     +    
Sbjct: 435  -KGRGLMAV-VAPYRAGVELAWDGTLVIGEDVL-----QPKTDRSARVASGAFRGLDKHE 487

Query: 478  ELREGAPVVHIDHGVGRYLGLQTLEIDNQAAEFLTMEYAEGAKLYVPVANLHLIARYTGS 537
             L+ G  +VH D+GV R++GL+ +++     +FL +EYA   +LY+PV  L L+ R+ G+
Sbjct: 488  GLQPGDLLVHRDYGVARFVGLERMDLGGVGNDFLLLEYAGDDRLYLPVDRLSLVQRFKGA 547

Query: 538  DDALAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSA 597
            DD    L RLG   WQ +K KA + +  +AA+L+++YA R   +GY +      Y  F A
Sbjct: 548  DDTKPSLDRLGGGAWQSSKDKARKAIEKIAADLVEMYAYRKIAKGYTYGPIGELYREFEA 607

Query: 598  GFAFEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAIL 657
             F FEETPDQ   I+ V  DM  P PMDRLVCGDVGFGKTEVA+RAAF A   G+QVA+L
Sbjct: 608  SFGFEETPDQARAIQDVLEDMDKPVPMDRLVCGDVGFGKTEVALRAAFRAASEGRQVALL 667

Query: 658  VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAIADLAEGKIDIVIGTHKLLS 717
             PTT+LA+QHY +FR R A +PV V ++SRF S ++    +A  A+G +DI+IGTH+LLS
Sbjct: 668  CPTTVLAEQHYQTFRSRLAGFPVNVGMLSRFVSKQKQTEVLAAAAKGHVDILIGTHRLLS 727

Query: 718  DDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 777
            DDV++ NLGL+++DEE RFGVR KE+LK  R  VD LTLTATPIPRTL +++SG+R+LS+
Sbjct: 728  DDVRLPNLGLLVLDEEQRFGVRHKEKLKQFRRNVDALTLTATPIPRTLQLSMSGIRELSV 787

Query: 778  IATPPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPE 837
            I T P  R  V T ++E++ + +K  L RE+ R GQV+++HN V+ +E+    + +LVP+
Sbjct: 788  IETAPPERKPVATALIERDDAALKSILEREIAREGQVFWVHNRVQGLERTTEYVRKLVPD 847

Query: 838  ARIAIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQ 897
            AR+ + HGQM ER LE+ M  F+H   +VL+ + I+E+G+D P ANT+I+++A  FGL Q
Sbjct: 848  ARVGMAHGQMTERALEETMHRFWHGELDVLVCTAIVESGLDFPRANTLIVDQAQMFGLGQ 907

Query: 898  LHQLRGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAGFVLATNDLEIRGA 957
            L+QLRGRVGRS  QAYA  + P    ++  A +R+  I +   LGAGF +A  DL IRGA
Sbjct: 908  LYQLRGRVGRSDRQAYAIFVVPDADNLSDIARERMRVILDMDYLGAGFQVAMEDLRIRGA 967

Query: 958  GELLGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRLPALIPEE 1017
            G +LG+ QSG +  VG  L++EMLE AV  + KG+ P          E+N+ +PA IPE 
Sbjct: 968  GNILGEAQSGHMTRVGLELFLEMLEEAVTRL-KGDPPRESVE----TELNIGIPAHIPEG 1022

Query: 1018 YLPDVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQAEQLGI 1077
            Y+ D   RL  YK ++SATD    +D+++EM DR+G+ P   +  + L +LK Q  ++ +
Sbjct: 1023 YIEDARDRLRFYKALSSATDAAAQQDIEMEMRDRYGVFPPELETFLALLVLKRQLRRMQV 1082

Query: 1078 KKVDAGPQGGRIEF-EAQTPVDPLVLIKLIQGQPNRYKFE-GATLFKFMVPMERAEERFN 1135
            ++ D  P   R+ + E QT VD   LI+ +    +R + +  ATL   +     A  R +
Sbjct: 1083 QRADIYPDKVRLVWDERQTAVDIGRLIEWVGQHADRARLQPPATLEWRLDTGLAAGARLD 1142

Query: 1136 TLEALFERLIPKS 1148
             +     RL+P S
Sbjct: 1143 AMRGELFRLVPDS 1155