Pairwise Alignments

Query, 873 a.a., DNA topoisomerase I from Pseudomonas simiae WCS417

Subject, 878 a.a., DNA topoisomerase I (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 1191 bits (3080), Expect = 0.0
 Identities = 592/883 (67%), Positives = 703/883 (79%), Gaps = 17/883 (1%)

Query: 1   MGKSLVIVESPAKAKTINKYLGNEYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAAGE 60
           MGKSLVIVESPAKAKTINKYLG E++VKSS+GHIRDLPTS  +  +++  +      A E
Sbjct: 1   MGKSLVIVESPAKAKTINKYLGKEFIVKSSVGHIRDLPTSSISDGTEKVKS------AAE 54

Query: 61  GPVLTPKEKAR-------KQLVSRMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTI 113
              ++P+EKAR       + LVSRMGV+P+ GW AKY+ILPGKEKV++EL+ LA  AD I
Sbjct: 55  VKKMSPEEKARYKKVKDHQALVSRMGVNPEKGWAAKYQILPGKEKVVKELQALADSADQI 114

Query: 114 YLATDLDREGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSKPGELDIDRVNAQQ 173
           YLATDLDREGEAIAWHL+E IGGD SRY+RVVFNEITK AIQEAFSKP  LD + VNAQQ
Sbjct: 115 YLATDLDREGEAIAWHLQEVIGGDPSRYQRVVFNEITKSAIQEAFSKPASLDTNMVNAQQ 174

Query: 174 ARRFLDRVVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEVHADL 233
           ARRFLDRVVG+MVSPLLW K+ARGLSAGRVQSVAV+LVVERE EI+AF+PEE+W+VHA L
Sbjct: 175 ARRFLDRVVGFMVSPLLWKKVARGLSAGRVQSVAVRLVVERESEIKAFVPEEFWDVHAQL 234

Query: 234 GTAKGANVRFEVAREKGEAFKPLNEAQAMAALEKLKSSSYSIVKREDKPTSSKPSAPFIT 293
            T     +R EV +    AF+P NE QA+AA++ L S+S+ ++ REDK T SKPSAPFIT
Sbjct: 235 NTPSSEALRMEVVKYLDSAFEPTNEQQALAAVQALSSASFKVIAREDKATQSKPSAPFIT 294

Query: 294 STLQQAASNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSVDAVAMARTYIEEEFGKK 353
           STLQQAAS RLGFGVKKTMMMAQRLYEAG+ITYMRTDSTNLS +A+   R  I +E+G K
Sbjct: 295 STLQQAASTRLGFGVKKTMMMAQRLYEAGHITYMRTDSTNLSQEALDSVREMIGKEYGAK 354

Query: 354 YLPEKPNVYSSKEGAQEAHEAIRPSDANTTPAKLSGMERDAERLYELIWRQFLACQMLPA 413
           YLP +P  Y SKEGAQEAHEAIRPS+     A L+ MERDA+RLYELIWRQF++CQM PA
Sbjct: 355 YLPAEPIRYGSKEGAQEAHEAIRPSNVKVEAAALTDMERDAQRLYELIWRQFVSCQMTPA 414

Query: 414 QYLSTTVTVAASDFELRAKGRILKFDGYTRVMPQIAKPGDDD-VLPDMAQGDTLKLITLD 472
            Y +T +TV A+D+EL+A GRIL+FDG+TRV   I K  ++D  LP + +GD L L+ L+
Sbjct: 415 LYDATKLTVKAADYELKATGRILRFDGWTRVQTAIKKKNEEDNTLPAVNEGDVLSLVELE 474

Query: 473 PSQHFTKPPARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVALHNRRFYSEKMGDI 532
           P QHFTKPPARYSEASLVKE+EKRGIGRPSTYA IISTIQ+RGYV + NRRFY+EKMG+I
Sbjct: 475 PKQHFTKPPARYSEASLVKELEKRGIGRPSTYATIISTIQERGYVKVENRRFYAEKMGEI 534

Query: 533 VTERLSESFSNLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFKKKLEVAE--SPES 590
           V+ERL  SF+ LM Y FTA ME+ LDDVA+GE DWK VLD FY DF K+LE AE    E 
Sbjct: 535 VSERLVNSFAELMSYDFTASMEQTLDDVAKGELDWKKVLDGFYADFTKQLEKAELAPEEG 594

Query: 591 GMRANQPVMTDIPCQTCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAAD 650
           GMR NQ VMT+I C TCGRPM IRT +TGVFLGCSGY LPPKERCK T+NL PG E  +D
Sbjct: 595 GMRLNQMVMTNIKCPTCGRPMGIRTGTTGVFLGCSGYELPPKERCKTTMNLTPGIEAISD 654

Query: 651 DEGESESLVLRGKHRCPICSTAMDAYLLDEKHKLHICGNNPDCNGYEIEEGTYRIKGYEG 710
            E ++E+  LR KHRC IC TAMD+YLLDEK KLH+CGNNP C GYE+EEG ++IKGYEG
Sbjct: 655 SE-DAETDALRAKHRCGICGTAMDSYLLDEKRKLHVCGNNPVCEGYEVEEGQFKIKGYEG 713

Query: 711 PSLECDKCGSEMQLKTGRFGKFFGCTNPTCKNTRKLLKSGDAAPPKMDPVKMPELKCEKV 770
           P +ECD+CG +M+LK GRFGK+FGCTN  CKNTRKLLK+G+AAPPK DP+ +PELKC K 
Sbjct: 714 PLIECDRCGHDMELKNGRFGKYFGCTNEECKNTRKLLKNGEAAPPKEDPIYLPELKCSKS 773

Query: 771 NDTYILRDGASGLFLAASQFPKNRETRAPLVLEIVPHKDEIDPKYHFLCEAPKKDPDGRP 830
           +  ++LRDGA+G+FLAAS FPK+RETRAPLV E+V +++ + PKY +L +AP  D DG  
Sbjct: 774 DAHFVLRDGAAGIFLAASTFPKSRETRAPLVEELVKYREFLWPKYQYLADAPIADDDGNK 833

Query: 831 AVIRYSRKTKEQYVQTEVDGKPTGWKAFYDGGKWKVEDKRQGA 873
           AV+++SRKTK+QYV TEVDGK TGW A Y  GKW  E   + A
Sbjct: 834 AVVKFSRKTKDQYVATEVDGKATGWSAHYVNGKWVSESSAKKA 876