Pairwise Alignments

Query, 464 a.a., multidrug transporter from Pseudomonas simiae WCS417

Subject, 458 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

 Score = 85.1 bits (209), Expect = 4e-21
 Identities = 92/403 (22%), Positives = 160/403 (39%), Gaps = 17/403 (4%)

Query: 19  RGLLTLALPIMIGQLATTAMSFVDAVMAGRVSPQDLAAVGLGNSIWIPVYLLMTGTLLAT 78
           R L+ +ALPI +  +  ++   VD +M G++   ++AAVG+         +++ G     
Sbjct: 17  RRLIAIALPITLQNIMFSSRGLVDVLMLGQLGEAEIAAVGVAARATFVTTIMLVGVTTGG 76

Query: 79  TPKVAQRYGAGQFSEIGPLVRQSLWLAVVVG-----ITASLLLLCAEPILHVMNVEPDLI 133
               AQ +GAG        VR+S  L  +V       T  L L   + I+ +      + 
Sbjct: 77  ALLTAQYWGAGDRKG----VRESTALTWLVSNFFAFFTVLLFLFFPQQIMSLTTDSEQVN 132

Query: 134 EPSMGYLHGIAAGMPAIALYYVLRCFSDGLGRTRPSMVMGLCGLALNIPLNYIFIYGHLG 193
                YL   +  M A+A    +      + +   S      G+  N+ LN+I I+G  G
Sbjct: 133 ALGSQYLIITSFTMFAVACVSSMAVGLRAMHKPGVSTFFSGIGIVSNVVLNWILIFGKFG 192

Query: 194 VPAMGGVGCGWATAIAMWVMMLGLAVW---TRWGPAYQSSELYKRFDWPQWAVIKRVLSI 250
            PAMG  G   AT ++  + +  L  +    +   A+   ++    DWP+   I R L +
Sbjct: 193 FPAMGIQGAAIATVLSGAIEIACLYSYLYGKKHLMAFGWQDIKAVIDWPK---ISRFLRL 249

Query: 251 GLPIGIAIFAESSIFAVIALLIGSLGATVVSGHQIALNVSSLVFMIPYSLSMAVTVRVGQ 310
            LP        ++       ++G  G   ++   +   V S+   +   +S A  V VG 
Sbjct: 250 SLPTTFNFLIWAAGLFTYHAIMGQTGVQGLAALSVMTPVESISLSLLIGMSTAAAVLVGN 309

Query: 311 ALGRGEPREARF-AAGVGMGTALAYACLSCSLMLLFREQIAAIYTPDPVVIHLASMLIVF 369
            LG        + A GV   + L    ++  L L+    + A     P    L+   ++ 
Sbjct: 310 QLGAKNYEAVYYQAIGVTACSVLVGIVVAIGLYLVQIPVLGAFTALTPETRELSEKFMLI 369

Query: 370 SALFQFSDSIQVTA-AGALRGYQDTRVTMVLTLFAYWGVGLPV 411
             L     S  +TA  G LR   D +  +   + A W +G+P+
Sbjct: 370 LCLGIVLRSFPMTAIVGVLRAGGDVKFCLGQDIVAQWCIGIPL 412



 Score = 43.9 bits (102), Expect = 1e-08
 Identities = 39/177 (22%), Positives = 78/177 (44%), Gaps = 8/177 (4%)

Query: 245 KRVLSIGLPIGIAIFAESSIFAVIALLIGSLGATVVSGHQIALNVSSLVFMIPYSLSMAV 304
           +R+++I LPI +     SS   V  L++G LG   ++   +A   + +  ++   ++   
Sbjct: 17  RRLIAIALPITLQNIMFSSRGLVDVLMLGQLGEAEIAAVGVAARATFVTTIMLVGVTTGG 76

Query: 305 TVRVGQALGRGEPREARFAAGVGMGTALAYACLSCSLMLLFREQIAAIYTPDPVVIHLAS 364
            +   Q  G G+ +  R +  +    +  +A  +  L L F +QI ++ T    V  L S
Sbjct: 77  ALLTAQYWGAGDRKGVRESTALTWLVSNFFAFFTVLLFLFFPQQIMSLTTDSEQVNALGS 136

Query: 365 MLIVFSALFQFSDSIQVTAAGALRGYQDTRVTMVLTLFAYWGVGLPVGYALGLTNWL 421
             ++ ++   F+ +   + A  LR      V+   T F+  G+G+     L   NW+
Sbjct: 137 QYLIITSFTMFAVACVSSMAVGLRAMHKPGVS---TFFS--GIGIVSNVVL---NWI 185



 Score = 28.5 bits (62), Expect = 5e-04
 Identities = 36/152 (23%), Positives = 60/152 (39%), Gaps = 7/152 (4%)

Query: 17  EVRGLLTLALPIMIGQLATTAMSFVDAVMAGRVSPQDLAAVGLGNSIWIPVYLLMTGTLL 76
           ++   L L+LP     L   A  F    + G+   Q LAA+ +   +      L+ G   
Sbjct: 242 KISRFLRLSLPTTFNFLIWAAGLFTYHAIMGQTGVQGLAALSVMTPVESISLSLLIGMST 301

Query: 77  ATTPKVAQRYGAGQFSEIGPLVRQSLWLAVVVGITASL-LLLCAEPILHVMN-VEPDLIE 134
           A    V  + GA  +  +          +V+VGI  ++ L L   P+L     + P+  E
Sbjct: 302 AAAVLVGNQLGAKNYEAVYYQAIGVTACSVLVGIVVAIGLYLVQIPVLGAFTALTPETRE 361

Query: 135 PSMGYLHGIAAGM-----PAIALYYVLRCFSD 161
            S  ++  +  G+     P  A+  VLR   D
Sbjct: 362 LSEKFMLILCLGIVLRSFPMTAIVGVLRAGGD 393