Pairwise Alignments

Query, 296 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 300 a.a., Secretion protein HlyD (NCBI) from Rhodospirillum rubrum S1H

 Score =  222 bits (565), Expect = 9e-63
 Identities = 121/285 (42%), Positives = 177/285 (62%), Gaps = 1/285 (0%)

Query: 3   KPFLTI-GRVVLTLLIVTFAVVVVWRMVMYYMFAPWTRDGHIRADIVQIAPDVSGLIQRV 61
           KP L++ GR  LTL +V  A ++ W         PWTRDG + AD+V+IAP+VSG +  V
Sbjct: 4   KPVLSLLGRYALTLCLVAGATLIAWEAWSRSERTPWTRDGRVSADVVRIAPEVSGTVSAV 63

Query: 62  DVRDNQLVTKGQVLFAVDQDRFKLALRQAQAAVADRQETLAQAQREYKRNRGLGNLVPSE 121
            +RDNQ V +G +L+ +D +R +LA+  A+A +  +++ +   Q   +R+  L ++V  E
Sbjct: 64  PIRDNQYVHRGDILYGIDPERLRLAVAVAEADLEAKRQDMLVRQATARRHGQLRDVVSQE 123

Query: 122 QLEESQSRVARAQSALAEAQVTVDSAQLNLDRSVIRSPVDGYVNDRAPRTQEFVTAGRPV 181
            ++++    A A +A   A  T+D A+L+L R+ +RSPVDGYV +   R  ++ TAG   
Sbjct: 124 AVQQAGGAAAVASAAYQAALATLDLAKLDLARATVRSPVDGYVINLRLRPGDYTTAGVTT 183

Query: 182 LSVVDSNSFHIDGYFEETKLDGIHVGMGVDIRVIGDNARLHGHVQSIVAGIEDRDRSSGS 241
           ++V+D+  F I GYFEETK+  I VG    IR++G +  + GHV+SI  GIE+ + + G 
Sbjct: 184 VAVLDAARFWITGYFEETKIGQIRVGSPARIRLMGFDRPVSGHVESIGHGIENGNDAPGP 243

Query: 242 NLLPNVNPAFSWVRLAQRIPVRIAFDDVPADFRMIAGRTATVSII 286
             LP V   FSWVRLAQRIPVRI  D VP D  + AG TAT+ II
Sbjct: 244 LGLPTVAATFSWVRLAQRIPVRIHVDQVPLDVALAAGMTATIEII 288