Pairwise Alignments

Query, 310 a.a., 2-deoxy-3-keto-D-ribonoate cleavage enzyme (from data) from Pseudomonas simiae WCS417

Subject, 300 a.a., hypothetical protein from Sinorhizobium meliloti 1021

 Score =  167 bits (422), Expect = 4e-46
 Identities = 112/325 (34%), Positives = 167/325 (51%), Gaps = 47/325 (14%)

Query: 1   MSKNRPVIITCAVTGAIHTPSMSPHLPITAQEIADAAIGAAEAGAAIVHLHARDPNDGRP 60
           +S NR V ITCAVTGA  T S S H+P+T ++IA++AI AA+AGAA+VH H RDP  G P
Sbjct: 3   LSMNREVFITCAVTGAGDTVSKSSHVPVTPKQIAESAIEAAKAGAAVVHCHVRDPETGAP 62

Query: 61  SQDPALFAEFLPQIKAAS-DVVINITTG-------------------GAPTMGVEERLQP 100
           ++   L+ E   +I++A  DVV+N+T G                   G    G  ER+  
Sbjct: 63  ARRLDLYREVTDRIRSADIDVVLNLTAGMGGDLVFGNVESPFPVDEKGTDMAGATERVAH 122

Query: 101 VMQFKPELASLNMGSMNFGLYEMLNRFTDFKHDWERPYLEESDDRIFRNTFRDITHILNA 160
           V +  PE+ +L+ G+MNF L +               Y+  +   + R   R +T +   
Sbjct: 123 VAECLPEICTLDCGTMNFSLGD---------------YVMTNTPSMLREMARQMTAL--- 164

Query: 161 CAENRTRFEIECYDIGHLYTAAHFLERGLLKPPLFIQSVFGLRGGIGGHPEDLAHMRRTA 220
                 R EIE +D GHL+ A    E GL++ P+ IQ   G+  G    P+DL       
Sbjct: 165 ----GVRPEIEAFDTGHLWFAKQLAEEGLIEDPVLIQLCMGIPWGA---PDDLNTFMAMV 217

Query: 221 DRLFGSDYVWSILGAGRGQIPLATMGLSMGSNARVGLEDSLWDGPGKLAASNADQVRRIR 280
           + +  S++ +S    GR  +      +  G N RVGLED+L+ G G+L A+NA  V +  
Sbjct: 218 NNV-PSNWTFSAFSIGRNAMAYPAAAVLAGGNVRVGLEDNLYVGKGQL-ATNAQLVEKAV 275

Query: 281 TVIEALGHRVATPDEAREILGLKGR 305
           +V+E++G ++  P+E R  L L  R
Sbjct: 276 SVVESMGAKIIGPEEVRRKLKLTKR 300