Pairwise Alignments

Query, 356 a.a., permase from Pseudomonas simiae WCS417

Subject, 361 a.a., permease PerM, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  304 bits (778), Expect = 3e-87
 Identities = 164/354 (46%), Positives = 229/354 (64%), Gaps = 9/354 (2%)

Query: 1   MFKVLRDWIQRYFSDEEAVVLAVLLFLAFTAVLTLGGMLAPVLAGMVLAYLMQGLVTTLE 60
           MF     W Q  FSD +AV L  +L      +   GG+LAP+L  +VLA+L++  V  + 
Sbjct: 1   MFSFFSRWYQERFSDPQAVTLLAILVGLALVLYFAGGLLAPLLVALVLAFLLEWPVAQML 60

Query: 61  RLRLPGGAAVGLVFALFMGLLVLFIVVVLPLLWHQLITLFNELPGMLAKWQSLLLLLPER 120
           +L +    A  LV  +F+G++VL    ++P +W Q ++L  +LP M+ K    +  L  +
Sbjct: 61  KLGINRTTAASLVLIIFLGIVVLLTFGLIPSVWRQGVSLMTDLPSMIDKGLQTVQGLATQ 120

Query: 121 YPHLVSDEQV-LQAIEAAR----GEIGKFGQWALTFSLSSLPLLVNIMIYLVLVPILVFF 175
           YP  +S EQ+ L   E  +      +    +  + +S S L L    M+Y +LVP+LVFF
Sbjct: 121 YPQFISVEQLNLMVAELKKLLDTQHVLDIAKQLIGYSASLLVL----MVYAILVPLLVFF 176

Query: 176 FLKDRVMIGRWVRGYLPRERALITRVAEEMNRQIANYIRGKVIEIIICGGVTYIAFIALD 235
           FLKD+  +    + + P  R L  +V  EM++QI NYIRGKVIEI+I G  +YI F  + 
Sbjct: 177 FLKDKDQLISGSKRFFPTNRQLARKVWFEMHQQIFNYIRGKVIEIVIVGVASYILFAFMG 236

Query: 236 LNYAALLALLVGISVVVPYVGAVVVTVPVALIALFQWGWSDQFIYLMAVYGIIQTLDGNV 295
           L+Y+ALL +L G+SV++PYVGA +VT+P+ L+A FQWG+S +F YLM  YGIIQ LDGNV
Sbjct: 237 LSYSALLGVLTGLSVLIPYVGATLVTLPIMLVAFFQWGFSSEFGYLMLGYGIIQALDGNV 296

Query: 296 LVPLLFSEAVNLHPVAIICAVLLFGGLWGFWGVFFAIPLATLFKAVLDAWPRQE 349
           LVP+LFS+AV+LHPV II AVL+FGGLWG  GVFFAIPLA+L KAV++AWP+ E
Sbjct: 297 LVPILFSDAVDLHPVIIIAAVLVFGGLWGVLGVFFAIPLASLVKAVINAWPKTE 350