Pairwise Alignments

Query, 320 a.a., RNA polymerase sigma-H factor AlgU from Pseudomonas simiae WCS417

Subject, 313 a.a., Negative regulator of sigma E activity from Pseudomonas stutzeri RCH2

 Score =  333 bits (854), Expect = 3e-96
 Identities = 167/311 (53%), Positives = 229/311 (73%), Gaps = 6/311 (1%)

Query: 1   MRAIPLLTLLLSGCFALPAHADEAQDWLTRLGRAEQQQSFQGTFVYERNGSFSTHDIWHR 60
           MR +PL  +++ G  ++PA A +A+ W+ RL  AEQ+QS+ GTFVYERNGSFS+H +W +
Sbjct: 1   MRVLPLY-VVIGGWLSMPALAADAESWMGRLAMAEQKQSYAGTFVYERNGSFSSHAVWQQ 59

Query: 61  VQEGQVRERLLQLDGSAQEVVRLDGRTQCVSGTLVAGLGNSRDAPSRALDPQKLKQFYEL 120
           V+ G+VRERLLQLDG+  EVV +DG+ QC +  L A +  ++    + LDP+ L ++YE 
Sbjct: 60  VEAGRVRERLLQLDGAPAEVVLVDGQMQCATDELAAQVREAQAWHGQRLDPKALSEWYEF 119

Query: 121 AVIGKSRVAGRNAVIVSITPRDQYRYGFELHLDRETALPLKSLLLNDQGQLLERFQFTRL 180
             IG SRVAGR AV +++ PRDQ+RYGFELHLDR+TALPLKSL+LN++GQLLERFQFT  
Sbjct: 120 RQIGDSRVAGRPAVALAVVPRDQHRYGFELHLDRDTALPLKSLMLNEKGQLLERFQFTHF 179

Query: 181 NTSVVPDDRDLQPSSECAPLSVANEKAPVVQPTEAWHLEWLPPGFQLTSTSSRKDTQTKA 240
           +T +  D ++L  SS C  +S++  +A +   + AW  +WLP GF+L   + R    +  
Sbjct: 180 STDI--DTQELTASSGCKAVSISKREANL---SSAWRSDWLPAGFKLLDANQRPSPASSE 234

Query: 241 TVDSLMYEDGLARFSVFLEPISDASVTETRTQLGPTVAVSRRLNTVDGEMMVTVVGEIPI 300
           TV  L Y DGLA+FSVFLEP+  A V + R+Q+GPTVAVS+R++T DG++MVTVVGEIP+
Sbjct: 235 TVSWLSYGDGLAKFSVFLEPLRGALVEDARSQMGPTVAVSKRISTADGDVMVTVVGEIPL 294

Query: 301 GTAERIALSVR 311
           GTAER+ALS+R
Sbjct: 295 GTAERVALSMR 305