Pairwise Alignments

Query, 320 a.a., RNA polymerase sigma-H factor AlgU from Pseudomonas simiae WCS417

Subject, 321 a.a., sigma-E factor regulatory protein RseB from Vibrio cholerae E7946 ATCC 55056

 Score =  114 bits (284), Expect = 4e-30
 Identities = 87/315 (27%), Positives = 148/315 (46%), Gaps = 17/315 (5%)

Query: 4   IPLLTLLLSGCFALPAHADEAQDWLTRLGRAEQQQSFQGTFVYERNGSFSTHDIWHRVQE 63
           I  LTL         A  + A+  L ++  A Q  +++ +++  +  S       H  Q+
Sbjct: 6   ISALTLFCVNSTTAFAEEESAEALLYQMNEASQHLNYELSYILVKKNSIEPLLYRHARQD 65

Query: 64  GQVRERLLQLDGSAQEVVRLDGRTQCVSG-----TLVAGLGNSRDAPSRALDPQKLKQFY 118
            Q    L+ L G  +EV+R       +       T+ +G   +   P    D  +L ++Y
Sbjct: 66  DQQLAHLVYLSGPVREVIRRGDEVSYIEPGVEPFTIESGNMVAPTIPMLNTDVAELSRYY 125

Query: 119 ELAVIGKSRVAGRNAVIVSITPRDQYRYGFELHLDRETALPLKSLLLNDQGQLLERFQFT 178
           +   +G++R AG    ++ + P+D  RY + + +D ++ LPL++ LL+  G++LE  Q+ 
Sbjct: 126 DFVKVGRAREAGAACQVLRVVPKDGLRYSYVVWVDEKSHLPLRADLLDRDGEVLE--QYR 183

Query: 179 RLNTSVVPDDRDLQPSSECAPL-SVANEKAPVVQPTEAWHLEWLPPGFQLTSTSSRKDTQ 237
            ++ SV     ++        L  V       VQ T  W + W+P GFQ    +  +   
Sbjct: 184 TISFSVSERLAEIMAGLNKVQLPEVLKLPKGSVQET-FWQVTWVPDGFQAMELNRYRMAM 242

Query: 238 TKATVDSLMYEDGLARFSVFLEPISDASVTETRTQLGPTVAVSRRL--NTVDGEMMVTVV 295
           T+  V+S MY DGL  FSV++      S ++  +  G  V   RR   + V GE  ++VV
Sbjct: 243 TERLVESQMYSDGLFNFSVYV------SASDNYSLKGQLVRQGRRTLHSVVKGENEISVV 296

Query: 296 GEIPIGTAERIALSV 310
           G+IP  TA+RIA SV
Sbjct: 297 GDIPPATAQRIAQSV 311