Pairwise Alignments

Query, 195 a.a., RNA polymerase sigma-H factor AlgU from Pseudomonas simiae WCS417

Subject, 212 a.a., sigma-E factor negative regulatory protein RseA from Vibrio cholerae E7946 ATCC 55056

 Score = 44.7 bits (104), Expect = 1e-09
 Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 34/160 (21%)

Query: 1   MSRDALQESLSAVMDNEADELELRRVLNAFDDAETRDTWSRYQVARAVMHKDLLIPR-LD 59
           ++R A +E LSA+MD E  + EL  +L    D + RDTW  Y +   V+  +  I +  +
Sbjct: 4   VNRMADKEKLSALMDGEMIDNEL--ILGLAQDQDARDTWKNYHLIGDVLRGEAPIHKEWN 61

Query: 60  IAAAVSAALADEAV-------------------------PAKAARGPWRS-LGRLAVAAS 93
           IA +V+ AL +E                            AK     W S  G++ +AA 
Sbjct: 62  IAESVALALENEPAHNPLHHSTNVIDLQQARLEAQPKPQQAKRQLPAWLSQFGQVGIAAC 121

Query: 94  VTVAVLAGVRLYNQDEIAGAELAQQTQQPVMAGPQVKGPA 133
           V++AV+ GV+ Y      G     + + PV+    + G A
Sbjct: 122 VSLAVIFGVQQY-----GGQSSGVENELPVLQTIPLAGSA 156