Pairwise Alignments

Query, 430 a.a., porin from Pseudomonas simiae WCS417

Subject, 416 a.a., outer membrane porin, OprD family. from Pseudomonas stutzeri RCH2

 Score =  357 bits (915), Expect = e-103
 Identities = 182/402 (45%), Positives = 262/402 (65%), Gaps = 12/402 (2%)

Query: 32  SPLSQAAFFEDSSATLETRNMYFNRDFRDGTSAQQSKRDEWAQGFMLNLQSGYTDGTVGF 91
           +P   A F +DS A+L+ RN Y NRDFR    A+Q+K  EWAQGF+   +SG+T+G +G 
Sbjct: 24  APAVMADFIDDSKASLQLRNYYLNRDFRQD-GAKQAKAAEWAQGFVTRFESGFTEGPIGL 82

Query: 92  GVDALGMLGVKLDSSPDRTGTGLLPTHDDGRA-ADEYSKLGLTGKVKISATELKIGSLIP 150
           G+DA+G LGVKLDSS DR GTGLLP     +   D+YS+LGLT K+++    L++G+L P
Sbjct: 83  GLDAIGELGVKLDSSSDRRGTGLLPFGPTSKEPVDDYSELGLTAKLRVDQNVLRLGTLQP 142

Query: 151 ELPILKPNDGRILPQTFNGGLITSKEFKNLVFTGGRLDKAKDRDDTNYEDIALNNKNSRF 210
            LP++  ND R+LP TF GG++TS+    L F GGRL +A  RD +  E I   +     
Sbjct: 143 WLPVVIFNDTRLLPSTFQGGMLTSQALDGLTFDGGRLTQANPRDSSAREKIGFGS----- 197

Query: 211 VSGATGKHFNFGGADYQFADKITGSYHFAQLDDVYRQHFLGLVASRPMGPG-TFGTDLRL 269
              AT   F+F G  Y    ++  SY++  L+++YRQ F+GLV +  +G G +  TDLR 
Sbjct: 198 ---ATSDAFDFAGGSYAINPQLAVSYYYGNLENIYRQQFVGLVHNTSLGNGFSLRTDLRY 254

Query: 270 AISDDTGAARGGKIDNTSLNGLFSYALNGHKLSAGYQHMSGDSAFPYVDGSDPYLVNFVQ 329
             S   G  R G+IDN + NG+   +  GH++SAG+Q  SGDS FP ++G   Y+VN V 
Sbjct: 255 FDSRGDGEERAGEIDNRNFNGIVGLSHGGHRVSAGWQIQSGDSRFPSLNGGAAYVVNLVT 314

Query: 330 INDFAGAEERSWQARYDFDFAKLGIPGLSFMSRYLSGDNIKLKNGETGKEWERNSEIKYV 389
           ++DF  A++ SWQ RYD++FA LG+PGLSFM+RY+ G N +     +G+EWER+S+I YV
Sbjct: 315 LHDFTHADQDSWQLRYDYNFAALGLPGLSFMTRYVDGRNARTNFSRSGEEWERDSDITYV 374

Query: 390 VQTGTFKDVAVRLRNATYRSNYSARDA-DEMRLLVSYSVALW 430
           VQ+G  K ++V+ RN ++RS    + A DE R++++Y++ALW
Sbjct: 375 VQSGALKGLSVQWRNLSFRSGNGLKTAIDENRVILNYTLALW 416