Pairwise Alignments

Query, 430 a.a., porin from Pseudomonas simiae WCS417

Subject, 424 a.a., outer membrane porin, OprD family. from Pseudomonas stutzeri RCH2

 Score =  397 bits (1021), Expect = e-115
 Identities = 205/421 (48%), Positives = 275/421 (65%), Gaps = 13/421 (3%)

Query: 18  TQTALASAATLAGFSPLSQAAFFEDSSATLETRNMYFNRDFRDGTSAQQSKRDEWAQGFM 77
           T  A + AA   G S ++ AAF EDS A +E RN Y NRDFR  + A QSK +EWAQGF+
Sbjct: 9   TLLAASIAAVALGASGVASAAFIEDSKAAVELRNFYMNRDFRQ-SGAAQSKAEEWAQGFI 67

Query: 78  LNLQSGYTDGTVGFGVDALGMLGVKLDSSPDRTGTGLLPTHDDG--RAADEYSKLGLTGK 135
           L ++SGYT+G VGFG+DA+G+LGVKLDSSPDRTGTG+L    +   RA D+Y   GLT K
Sbjct: 68  LKMESGYTEGPVGFGLDAVGLLGVKLDSSPDRTGTGILQRDRNAPNRAQDDYGSAGLTAK 127

Query: 136 VKISATELKIGSLIPELPILKPNDGRILPQTFNGGLITSKEFKNLVFTGGRLDKAKDRDD 195
            K+SAT L +G+L P +P+L  ND R+LPQT+ G  + SKE   L    G LD+   RD 
Sbjct: 128 AKLSATTLHVGTLQPVVPVLMRNDSRLLPQTYRGAWLQSKEVSGLTLDLGMLDRVNQRDS 187

Query: 196 TNYEDIALNNKNSRFVS----GATGKHFNFGGADYQFADKITGSYHFAQLDDVYRQHFLG 251
           ++ E++ + N   R ++    G+T   F F G  Y ++ ++  SY++  LD +Y QH   
Sbjct: 188 SDNEEMTVFNAGRRNITFGSGGSTSDEFLFAGGRYDWSPQLATSYYYGGLDGIYDQHNFN 247

Query: 252 LVASRPMGPG-TFGTDLRLAISDDTGAARGGKIDNTSLNGLFSYALNGHKLSAGYQHMSG 310
           LV   P+G   +F TDLR   S D G   G  +DN +   LF+Y L GH  + GYQHM G
Sbjct: 248 LVHVLPLGDKQSFKTDLRFVRSTDDG---GSNVDNDAFGALFTYKLGGHGFTGGYQHMRG 304

Query: 311 DSAFPYVDGSDPYLVNFVQINDFAGAEERSWQARYDFDFAKLGIPGLSFMSRYLSGDNIK 370
           D+ F YV G D  L+N +QINDF   +ERSWQ RYD+DFA +G+PGL+ M+RY+SGDN+ 
Sbjct: 305 DTGFAYVAGGDNALINLLQINDFGNEDERSWQVRYDYDFAAMGVPGLTLMTRYVSGDNVD 364

Query: 371 LKNGET-GKEWERNSEIKYVVQTGTFKDVAVRLRNATYRSNYSARDADEMRLLVSYSVAL 429
              G + GK WERN++I YV+Q+G  K++ ++LRNAT RSN+   D DE R++VSYS+ L
Sbjct: 365 RGAGASEGKTWERNTDIAYVIQSGPLKNLGLKLRNATTRSNFQ-NDLDENRVIVSYSLPL 423

Query: 430 W 430
           W
Sbjct: 424 W 424