Pairwise Alignments

Query, 540 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 650 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

 Score =  278 bits (712), Expect = 3e-79
 Identities = 170/436 (38%), Positives = 257/436 (58%), Gaps = 17/436 (3%)

Query: 106 LEDDERAAGDKLDQIWPTYISSSERIMALLDGGQVDQARAQLNTSNNELFRQARELIRVM 165
           L DD++A+ DK        ++  E+  A  D  +  Q R +      EL R   +   V+
Sbjct: 229 LNDDQQASMDKA-------LAELEQYRAAFD--EFRQNRGE----RLELERSMAQQSEVV 275

Query: 166 IESNNRQIKEGAVAADELRNSALTWMISGIV--LAFLIAIIIGVLITRLITRPIAQAVQS 223
           I + +  +   + A  + + S+  +++ G++  LA  + ++   +I+R+I  P+   VQ 
Sbjct: 276 IAAADEALANASNAMQQQQRSS--YLLLGVIGALAIFVGLLAATVISRMIVGPLRSTVQQ 333

Query: 224 AQRIAQGDLTQAIITERTDEAGQLLMALSDMQGGLKSTLVEIANASDQLASAAEELSAVT 283
           AQR+A GDLT +  + R DE GQL  A+  M   L++ +  I     Q+A+AA++LSAVT
Sbjct: 334 AQRVANGDLTHSEASARRDEVGQLQNAMHGMTQSLRNLIGRIGGGVSQIAAAADQLSAVT 393

Query: 284 DESSRGLTRQNDEIQQAATAVNQMTAAVDEVASNAVSTSEASRQATTEAEDGRQQVEQAV 343
            ++S G+  Q  E +Q ATA+++M A V EVA NA   S A+RQA  +A  G + V+ AV
Sbjct: 394 AQTSAGVQTQRVETEQVATAMHEMAATVQEVARNAEQASIAARQADQQARQGDRVVQDAV 453

Query: 344 SGMSSMVVEINDSTQSVADLAGQVREIGKVIDVIRGIADQTNLLALNAAIEAARAGEQGR 403
             + ++  E++ S  ++  L  +   IG V++VIR +A+QTNLLALNAAIEAARAGEQGR
Sbjct: 454 GQIGNLASEVDQSAHAIEALHAESGRIGSVLEVIRAVAEQTNLLALNAAIEAARAGEQGR 513

Query: 404 GFAVVADEVRALAHRTQISTVDIEKMIGDVQTGADDAVAAMNKSLTWANNTQTLAQNAGE 463
           GFAVVADEVRALA RT  ST +IE +I ++Q  A  AV  M  S +    T  LA  AG 
Sbjct: 514 GFAVVADEVRALARRTHDSTEEIEGLIANLQRVAQQAVEQMQSSRSLTQRTVDLANEAGV 573

Query: 464 ALQRITASVAKINERNLVIASASEEQAQVAREVDRNLLNIQDLSTQTAAGAHQTNASSQD 523
           AL RIT SV+ I + N  IA+A+E+Q+ VA  +  ++  ++D+  Q+A+   QT  +S +
Sbjct: 574 ALGRITESVSTIEQMNQQIAAAAEQQSAVAENISESVTRVRDIGDQSASATEQTAGASAE 633

Query: 524 LSRLATSFNVLVSKFQ 539
           L+RL      LV +F+
Sbjct: 634 LARLGVELQGLVRQFR 649



 Score = 46.6 bits (109), Expect = 3e-09
 Identities = 67/253 (26%), Positives = 105/253 (41%), Gaps = 35/253 (13%)

Query: 89  QELKRS--QASYATYRATPLEDDERAAGDKLDQIWPTYISSSERIMALLDGGQVDQARAQ 146
           QE+ R+  QAS A  +A    D +   GD++ Q     I +           +VDQ+   
Sbjct: 422 QEVARNAEQASIAARQA----DQQARQGDRVVQDAVGQIGNL--------ASEVDQSAHA 469

Query: 147 LNTSNNELFR--QARELIRVMIESNNRQIKEGAVAADELRNSALTWMISGIVLAFLIAII 204
           +   + E  R     E+IR + E  N      A+ A         + +        +A  
Sbjct: 470 IEALHAESGRIGSVLEVIRAVAEQTNLLALNAAIEAARAGEQGRGFAV--------VADE 521

Query: 205 IGVLITRL--ITRPIAQAVQSAQRIAQGDLTQA----IITERT-DEAGQLLMALSDMQGG 257
           +  L  R    T  I   + + QR+AQ  + Q      +T+RT D A +  +AL    G 
Sbjct: 522 VRALARRTHDSTEEIEGLIANLQRVAQQAVEQMQSSRSLTQRTVDLANEAGVAL----GR 577

Query: 258 LKSTLVEIANASDQLASAAEELSAVTDESSRGLTRQNDEIQQAATAVNQMTAAVDEVASN 317
           +  ++  I   + Q+A+AAE+ SAV +  S  +TR  D   Q+A+A  Q   A  E+A  
Sbjct: 578 ITESVSTIEQMNQQIAAAAEQQSAVAENISESVTRVRDIGDQSASATEQTAGASAELARL 637

Query: 318 AVSTSEASRQATT 330
            V      RQ  T
Sbjct: 638 GVELQGLVRQFRT 650