Pairwise Alignments

Query, 540 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 539 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

 Score =  391 bits (1005), Expect = e-113
 Identities = 241/542 (44%), Positives = 334/542 (61%), Gaps = 10/542 (1%)

Query: 1   MKISTKLLLSFLLCALVTLAVGLLGIKGVVRLSTALELTFSNNLVSVSNTAATLNGLVAH 60
           M +S +  L F L  L+ L +GL  I  + ++ +         L S+      LN     
Sbjct: 6   MNVSQRSALGFGLIGLIVLLLGLFAILQMGKIRSEAAKLSDEWLPSIV-ALGDLNQHTLR 64

Query: 61  NR--GLYRLMDASKGDVSPQDRDRVRQDIAQELKRSQASYATYRATPLEDDERAAGDKLD 118
            R   L  ++D ++ + +     R R +++       +    Y+ T     ER       
Sbjct: 65  TRIHTLRLIIDRTRVEENRATLARFRNELS-------SLEDAYQRTVDHPQERELFQNYQ 117

Query: 119 QIWPTYISSSERIMALLDGGQVDQARAQLNTSNNELFRQARELIRVMIESNNRQIKEGAV 178
           +    +      I+ L   G++++A   + +  N       E +  M   NN Q    A 
Sbjct: 118 RARTAFDEVLSEIVRLEGQGRIEEAVEVVGSRLNTAGTGLNEAVARMTAFNNEQSALSAA 177

Query: 179 AADELRNSALTWMISGIVLAFLIAIIIGVLITRLITRPIAQAVQSAQRIAQGDLTQAIIT 238
           +A  +  S+  WMI  IVLA L+ +++  + TR I +P+ QAV  A+ +A GDLT+ I  
Sbjct: 178 SAAAIFQSSQAWMIGTIVLAVLLTVVLAWIFTRSIVQPLQQAVSIAEVVASGDLTRHIDI 237

Query: 239 ERTDEAGQLLMALSDMQGGLKSTLVEIANASDQLASAAEELSAVTDESSRGLTRQNDEIQ 298
              DE  +LL AL  MQ  L+ T+  I+++S QLASAAE+L+ VT++S+RG+ +Q+ EI+
Sbjct: 238 VGRDEPARLLTALRSMQERLRGTIQSISHSSSQLASAAEQLNVVTEDSTRGMNQQSHEIE 297

Query: 299 QAATAVNQMTAAVDEVASNAVSTSEASRQATTEAEDGRQQVEQAVSGMSSMVVEINDSTQ 358
           QAATAVN+MTAAVDEVA NAV+TSEASR +   A+ GR QV + V  +  +  ++  ++ 
Sbjct: 298 QAATAVNEMTAAVDEVARNAVATSEASRDSDATAQHGRNQVIRTVDSIGQLAGDVTQTSA 357

Query: 359 SVADLAGQVREIGKVIDVIRGIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAHR 418
            V  LA QVR+I KV+DVIR IA+QTNLLALNAAIEAARAG+ GRGFAVVADEVRALAHR
Sbjct: 358 EVERLAAQVRDISKVLDVIRSIAEQTNLLALNAAIEAARAGDAGRGFAVVADEVRALAHR 417

Query: 419 TQISTVDIEKMIGDVQTGADDAVAAMNKSLTWANNTQTLAQNAGEALQRITASVAKINER 478
           TQ ST +IE+MIGDV  G D AV AM  S   A  T  LA+ AGEAL+ I A++++I+ER
Sbjct: 418 TQQSTQEIEQMIGDVHQGTDRAVQAMQVSNERARTTLDLARAAGEALEEIAAAISQISER 477

Query: 479 NLVIASASEEQAQVAREVDRNLLNIQDLSTQTAAGAHQTNASSQDLSRLATSFNVLVSKF 538
           NLVIASASEEQAQVAREVDRNL+NI+DLS Q++AGA Q++A+SQ+L+RLA   N LV  F
Sbjct: 478 NLVIASASEEQAQVAREVDRNLVNIRDLSLQSSAGASQSSAASQELARLAVGLNGLVGGF 537

Query: 539 QL 540
           ++
Sbjct: 538 RV 539