Pairwise Alignments

Query, 540 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  239 bits (611), Expect = 1e-67
 Identities = 178/555 (32%), Positives = 285/555 (51%), Gaps = 33/555 (5%)

Query: 1   MKISTKLLLSFLLCALVTLAVGLLGIKGVVRLSTALELTFSNNLVSVSNTAATLNGLVAH 60
           + I  K+ ++F + AL+ LA G         L  +L  T  ++++++++   TL  ++  
Sbjct: 7   LAIGKKIAVAFGVIALINLAFGGY-------LYNSLH-TIKSDVLNLTDD--TLPSMMLV 56

Query: 61  NRGLYRLMDASKGDVS---PQDRDRVRQDI----------AQELKRSQASYATYRATPLE 107
           N   Y +    +  +S     D   + +DI          AQ+L R + S  T       
Sbjct: 57  NGIKYNMSSVRRAQISLLSSTDEAEIAEDIRWMNDHYQQIAQDLSRYERSIWT------- 109

Query: 108 DDERAAGDKLDQIWPTYISSSERIMALLDGGQVDQARAQLNTSNNELFRQARELIRVMIE 167
           D ER+    +  +W  Y+         +   ++ +A+  L  S    F +    I  +++
Sbjct: 110 DHERSIFMPVKNLWNEYLRQLGSFNNDILQKEMIKAQQDLQRSL-PTFEKLETAIDELLK 168

Query: 168 SNNRQIKEGAVAADELRNSALTWMISGIVLAFLIAIIIGVLITRLITRPIAQAVQSAQRI 227
            N   +        EL ++   + ++ IV        +  L+T LI  P+ Q V  A  I
Sbjct: 169 LNLSYVDNNRSELTELIDNISEFSVASIVALLAFMSAVTWLLTNLICSPLMQVVTQANAI 228

Query: 228 AQGDLTQAIITERT--DEAGQLLMALSDMQGGLKSTLVEIANASDQLASAAEELSAVTDE 285
           A+G+L   +  +    DE G+L  A S MQ  L+  + EI  ++ QLA A +E+SAV+++
Sbjct: 229 AEGNLAHRLDRKTIGHDELGELADACSKMQNNLRLMVEEIITSATQLAHAVDEVSAVSEQ 288

Query: 286 SSRGLTRQNDEIQQAATAVNQMTAAVDEVASNAVSTSEASRQATTEAEDGRQQVEQAVSG 345
           +S+G+  Q +E+ Q ATA+ +M + V EVA N    S+ASR ++  A  G QQ+      
Sbjct: 289 TSQGMQIQQEEVMQIATAMAEMKSTVAEVARNTEVASDASRDSSQHANVGSQQMRAVNDS 348

Query: 346 MSSMVVEINDSTQSVADLAGQVREIGKVIDVIRGIADQTNLLALNAAIEAARAGEQGRGF 405
           +  +  EI  + Q V +L  Q ++I  V+DVI  IA+QTNLLALNAAIEAARAGEQGRGF
Sbjct: 349 IQHVNQEIGRTEQRVLELESQAQQINMVVDVISNIAEQTNLLALNAAIEAARAGEQGRGF 408

Query: 406 AVVADEVRALAHRTQISTVDIEKMIGDVQTGADDAVAAMNKSLTWANNTQTLAQNAGEAL 465
           AVVADEVR+LA +TQ ST DI ++I ++Q  A  A    N S    N+    +Q   +A+
Sbjct: 409 AVVADEVRSLAGKTQQSTGDIVEIIQNLQACAQKARETTNNSRELINHCVEQSQETQQAI 468

Query: 466 QRITASVAKINERNLVIASASEEQAQVAREVDRNLLNIQDLSTQTAAGAHQTNASSQDLS 525
           ++I    ++I +  + IASA  EQ  V+ E+ RN+  I + + Q A G+     S  +LS
Sbjct: 469 EQIRHQSSQIADMTIQIASACGEQDSVSEELSRNIERINESAKQVAQGSSSAAQSCAELS 528

Query: 526 RLATSFNVLVSKFQL 540
           +LA+     V +F+L
Sbjct: 529 QLASQLQDTVQRFRL 543