Pairwise Alignments

Query, 540 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 596 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  242 bits (618), Expect = 3e-68
 Identities = 171/549 (31%), Positives = 284/549 (51%), Gaps = 20/549 (3%)

Query: 3   ISTKLLLSFLLCALVTLAVGLLGIKGVVRLSTALELTFSNNLVSVSNTAATLNGLVAHNR 62
           +  +L L  +L  +  L +G  G+ G+   S ++E  ++  +         L+ L +   
Sbjct: 53  VGLRLKLIVVLIVVSILFLGFKGLTGMQSASDSIESLYTKGMQHTIRAGRILDELGSARS 112

Query: 63  GLYRLMDASKGDVSPQDRDRVRQDIAQELKRSQASYATYR--------ATPLEDDERAA- 113
              +L+ A + D S +        I   ++  Q S             AT L+  E+A  
Sbjct: 113 ---QLLLAFQHDPSSKYALMHDHPITMHVEGIQTSLTNLHRIVDNEILATVLDVQEKAVI 169

Query: 114 ---GDKLDQIWPTYISSSERIMALLDGGQVDQARAQLNTSNNELFRQARELIRVMIESNN 170
               +KLDQ+        E  +  L   + D A   L    N L+ + ++     ++   
Sbjct: 170 QTLKEKLDQVTR---QGFEPALQQLKAEKYDAANLILLQVINPLYNEIKKAAEAFLDIQT 226

Query: 171 RQIKEGAVAADELRNSALTWMISGI-VLAFLIAIIIGVLITRLITRPIAQAVQSAQRIAQ 229
           ++ K    A+    N  + WM+S +   A ++   + +LI + +   +     SA  IA 
Sbjct: 227 QEGKNNFSASQHEINQFI-WMVSLLGAFALIVTTSLALLIAKRVNNAVHHLASSATHIAA 285

Query: 230 GDLTQAIITERTDEAGQLLMALSDMQGGLKSTLVEIANASDQLASAAEELSAVTDESSRG 289
           GDLTQ I     DE   +   ++ +    +  +    ++   LA+AAEE +AV  ++ + 
Sbjct: 286 GDLTQRIPVTGNDEFSDIAKYVNRIVTSFQEVISSNRHSVSALATAAEENAAVAMQTKQN 345

Query: 290 LTRQNDEIQQAATAVNQMTAAVDEVASNAVSTSEASRQATTEAEDGRQQVEQAVSGMSSM 349
           +  Q  + QQ A A++Q TA V EVA +A   +EAS +A   A  GR+ VE+ ++ +  +
Sbjct: 346 IVEQQSQTQQIAAAIHQFTATVHEVAQSAGLAAEASEEAEQAAMQGRKVVEENIAMIEGL 405

Query: 350 VVEINDSTQSVADLAGQVREIGKVIDVIRGIADQTNLLALNAAIEAARAGEQGRGFAVVA 409
             ++     ++  LA    +IG V+DVI+ I++QTNLLALNAAIEAARAGEQGRGFAVVA
Sbjct: 406 SNDLQKMLAAMQLLAKDSEDIGSVVDVIQSISEQTNLLALNAAIEAARAGEQGRGFAVVA 465

Query: 410 DEVRALAHRTQISTVDIEKMIGDVQTGADDAVAAMNKSLTWANNTQTLAQNAGEALQRIT 469
           DEVR LA RTQ ST  I + +  +Q  + D+   + + ++ A+     A+ AG AL +IT
Sbjct: 466 DEVRTLASRTQESTKQILQTVQRLQQSSRDSANLIEQGVSGASKAVEKARLAGTALSQIT 525

Query: 470 ASVAKINERNLVIASASEEQAQVAREVDRNLLNIQDLSTQTAAGAHQTNASSQDLSRLAT 529
           A+V +I+  N  IA+ASEEQ+ V  E+++N++ I ++S QTA GA Q++ ++ +L+RLA 
Sbjct: 526 ANVDRISTMNTQIATASEEQSAVTEEINKNIITISEISNQTALGAQQSSEATLELARLAE 585

Query: 530 SFNVLVSKF 538
           S    V+++
Sbjct: 586 SMQQEVARY 594