Pairwise Alignments

Query, 540 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  226 bits (576), Expect = 2e-63
 Identities = 173/552 (31%), Positives = 282/552 (51%), Gaps = 27/552 (4%)

Query: 1   MKISTKLLLSFLLCALVTLAVGLLGIKGVVRLSTALELTFSNNLVSVSNTAATLNGLVAH 60
           + I  K+  SF + A+++L   +  I  + ++ + L     + L ++ N  A  + +   
Sbjct: 6   LSIGKKIAASFSVIAVISLGFAIYLISELDKIQSELLNYTDDTLPAMENVDAIKDKMSYW 65

Query: 61  NRGLYRLMDASKGDVSPQDRDRVRQDIAQELKRSQA----SYATYRATPLEDDERAAGDK 116
            R  + ++         +D  ++RQ I +   R QA    S   Y  T    +E     +
Sbjct: 66  RRTQFAVLPM-------KDEAQIRQTIERN-NRVQAEINDSLVAYGKTVWPGEEEQTFKR 117

Query: 117 LDQIWPTYISSSERIMALLDGGQVDQARAQLNTSNNEL------FRQARELIRVMIESNN 170
           L   W  Y + +++    L     D A   L  S +        F     ++   ++SN 
Sbjct: 118 LMGNWNAYTAVTDQFNQTLLTQGADDAYPILANSLSTFEALESDFTLLIGILHQAMDSNK 177

Query: 171 RQIKEGAVAADELRNSALTWMISGIVLAFLIAIIIGVLITRLITRPIAQAVQSAQRIAQG 230
            QI    +++ +  NS     ++  +    I +++  L+TRLI  P+A  ++ +  IA+G
Sbjct: 178 VQI----LSSVKTLNST---SVASNIAILAIMVLMTWLLTRLICGPLAIVMKQSNAIAKG 230

Query: 231 DLTQAIITER--TDEAGQLLMALSDMQGGLKSTLVEIANASDQLASAAEELSAVTDESSR 288
           DL+Q +       DE G L  A   MQ  L+  + EI +A  QL+SA EE++ ++++S+ 
Sbjct: 231 DLSQTMDRSSIGNDELGTLANASEQMQQNLRQLIDEIISAVTQLSSAVEEMTQISNQSAD 290

Query: 289 GLTRQNDEIQQAATAVNQMTAAVDEVASNAVSTSEASRQATTEAEDGRQQVEQAVSGMSS 348
           G+  Q  +I Q ATA+ QM AAV +VA N   ++  +  A  ++++G ++    V  +  
Sbjct: 291 GMKEQQYQITQVATAMAQMKAAVADVARNTEDSASQAMAANHKSQEGARENASMVRSIQQ 350

Query: 349 MVVEINDSTQSVADLAGQVREIGKVIDVIRGIADQTNLLALNAAIEAARAGEQGRGFAVV 408
           +   I ++ Q+V++L  Q  +I  V+DVIR IADQTNLLALNAAIEAARAGE GRGFAVV
Sbjct: 351 VADIIGEAGQTVSELEQQSSQINVVVDVIRSIADQTNLLALNAAIEAARAGESGRGFAVV 410

Query: 409 ADEVRALAHRTQISTVDIEKMIGDVQTGADDAVAAMNKSLTWANNTQTLAQNAGEALQRI 468
           ADEVR LA RTQ ST +I  +I  +Q  A  A  A  +S +  +       ++   +  I
Sbjct: 411 ADEVRTLAGRTQDSTGEITTIIEKLQVMAKQAKDATERSRSSIDKCVEQGNHSQSLMISI 470

Query: 469 TASVAKINERNLVIASASEEQAQVAREVDRNLLNIQDLSTQTAAGAHQTNASSQDLSRLA 528
             S+A I +    IASA  EQ  VA E+ RN+ NI   S + A G+ QT  + ++L++LA
Sbjct: 471 EESIANIADVGTQIASACSEQDSVADELSRNVENIHLASQEVAQGSQQTAQACRELTQLA 530

Query: 529 TSFNVLVSKFQL 540
            S    + +F++
Sbjct: 531 VSLQDTLRRFKI 542