Pairwise Alignments

Query, 387 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 421 a.a., Arabinose efflux permease from Pseudomonas stutzeri RCH2

 Score =  142 bits (357), Expect = 2e-38
 Identities = 101/378 (26%), Positives = 171/378 (45%), Gaps = 7/378 (1%)

Query: 3   PRLHCARLALFLCGCAAFLNLYATQSILQTFATQFHISAKMAGWSITVTTLAVAITAPFV 62
           PR     LALF  G A F  LY  Q ++   +  F I+A  +   ++++TL +A+     
Sbjct: 29  PRFARTALALFAGGFATFALLYCVQPMMPMLSQAFGINAAQSSLILSLSTLTLAVGLLIT 88

Query: 63  SRLTGRFELRTVISVAALLLAVPALMTAYADSFAEVLVWRFVEGMLIPVVFATSVAYIGD 122
             ++     + V+ V+ L  AV  + +A A S+  VL+ R + G+ +  V A ++ Y+ +
Sbjct: 89  GPISDAIGRKQVLVVSLLAAAVFTVGSALAPSWHGVLLMRALVGLALSGVAAVAMTYLSE 148

Query: 123 RWRGGTVTEVTSLYVAGTVLGGFAGRFVTGVMTEYAGWREAFELLAVLSLTVGGFIQFLL 182
                 +     LY+ G  +GG +GR ++GV+ +Y  W     L+  L+L     +   L
Sbjct: 149 EIHPHHLGLAMGLYIGGNAIGGMSGRLLSGVLVDYLSWHSVLGLMGGLALLAALLLWRFL 208

Query: 183 PAS---HGRPLRGE---TAFSAVFRKPLLA-AYAVGFCVLFSQVAAFTYAGLYLGLPPFG 235
           P S     RPLR +     +S  FR   L   +  GF ++ S V  + Y G  L   PF 
Sbjct: 209 PESRHFRPRPLRLQGLLQGYSLHFRDAGLPWLFLQGFLLMGSFVTLYNYIGYRLIAEPFH 268

Query: 236 LGPAALGTLYTVFLLALIVIPVAGRLSKSRPHAELLSVAAGLGISGSALTLVPSLWCIVV 295
           L    +G L  ++L  +      G L+       +  +   L ++G  LTL   L  +++
Sbjct: 269 LSQTMIGLLAVLYLSGIYSSAQVGALADRFGRRRVFWLVIALMLAGVGLTLFDRLPLVLL 328

Query: 296 GLALSSTGVFLAQAAANAFTAATAGDNKAGAVGMYLTCYYLGGSCGAIVPALIWERWGWA 355
           G+ L + G F A + A+++    A   +  A  +YL  YYLG S    +  + W   GW 
Sbjct: 329 GMLLFTFGFFGAHSVASSWIGRRARQARGQASSLYLFSYYLGSSIAGTLGGVFWHAAGWD 388

Query: 356 GCVTLIIAFQILTLLIAL 373
           G    I +  ++   +AL
Sbjct: 389 GVGLFIASLLLIAFAVAL 406