Pairwise Alignments

Query, 387 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 413 a.a., multidrug resistance protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  141 bits (355), Expect = 4e-38
 Identities = 100/384 (26%), Positives = 177/384 (46%), Gaps = 24/384 (6%)

Query: 11  ALFLCGCAAFLNLYATQSILQTFATQFHISAKMAGWSITVTTLAVAITAPFVSRLTGRFE 70
           AL +     ++NLY  Q +L   A  F +    A   ++VT+ ++A +    + ++ R  
Sbjct: 18  ALCVASVVVYINLYLMQGMLPLLAEHFSVPGSQATLILSVTSFSLAFSLLIYAVVSDRIG 77

Query: 71  LRTVISVAALLLAVPALMTAYADSFAEVLVWRFVEGMLIPVVFATSVAYIGDRWRGGTVT 130
             T I V+  LLA+  L+  + + F  ++  RF++G+L+  V A ++AY  ++    T+ 
Sbjct: 78  RHTPIVVSLWLLALSNLLLIWVEDFNALVYVRFLQGILLAAVPAIAMAYFKEQLSPSTML 137

Query: 131 EVTSLYVAGTVLGGFAGRFVTGVMTEYAGWREAFELLAVLSLTVGGFIQFLLP------- 183
           +   +Y+    +GG AGR + GVM+++  W+E+  LL +++L       +LLP       
Sbjct: 138 KAAGIYIMANSIGGIAGRLLGGVMSQFLSWQESMWLLFLVTLAGVALTNYLLPSGADAKV 197

Query: 184 -----------ASHGRPLRGETAFSAVFRKP-LLAAYAVGFCVLFSQVAAFTYAGLYLGL 231
                      +   R L+    FS     P +  AYA+G       V  F++  L+L  
Sbjct: 198 MSGGQTSSPSRSKRARLLQDFYGFSHHLTDPQMRLAYAIGGITFMMMVNQFSFIQLHLMA 257

Query: 232 PPFGLGPAALGTLYTVFLLALIVIPVAGR-LSKSRPHAELLSVAAGLGISGSALTLVPSL 290
            P+         ++  +    +      + L+K   H +L   +  L + GS LTL  + 
Sbjct: 258 APYEWSRFQATLIFLCYSSGTVASYFTAKWLAKFGQH-KLYQWSWCLMLLGSLLTLFDTT 316

Query: 291 WCIVVGLALSSTGVFLAQAAANAFTAATAGDNKAGAVGMYLTCYYLGGSCGAIVPALIWE 350
             I +G  +++ G FL  +  N+F A  A  ++A A  +YL CYYLG + G     L W 
Sbjct: 317 LTICMGFLMTACGFFLTHSCCNSFVAMRASRDRAKATSLYLCCYYLGAALGGPYLMLFWH 376

Query: 351 RWGWAGCVTLIIAFQILTLLIALT 374
           +  W G   +++    L  LIAL+
Sbjct: 377 KAEWQG---VVMGSLTLLALIALS 397