Pairwise Alignments

Query, 387 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 417 a.a., Inner membrane transport protein YnfM from Enterobacter sp. TBS_079

 Score =  157 bits (398), Expect = 4e-43
 Identities = 106/362 (29%), Positives = 168/362 (46%), Gaps = 9/362 (2%)

Query: 3   PRLHCARLALFLCGCAAFLNLYATQSILQTFATQFHISAKMAGWSITVTTLAVAITAPFV 62
           P+     LALF  G A F  LY  Q IL   + +F +S   +  S++++T  +AI   F 
Sbjct: 33  PQFMRVTLALFSAGLATFALLYCVQPILPVLSHEFGVSPASSSISLSISTGMLAIGLLFT 92

Query: 63  SRLTGRFELRTVISVAALLLAVPALMTAYADSFAEVLVWRFVEGMLIPVVFATSVAYIGD 122
             L+     + V+  A +L ++  L++    S+  +LV R + G+ +  V A  + Y+ +
Sbjct: 93  GPLSDAIGRKQVMVTALMLASICTLLSTMMTSWHGILVMRALIGLSLSGVAAVGMTYLSE 152

Query: 123 RWRGGTVTEVTSLYVAGTVLGGFAGRFVTGVMTEYAGWREAFELLAVLSLTVGGFIQFLL 182
                 V     LY++G  +GG +GR ++GV T++  WR A  ++   +L        +L
Sbjct: 153 EIHPSFVAFSMGLYISGNSIGGMSGRLLSGVFTDFFNWRIALAVIGCFALASALMFWRIL 212

Query: 183 PAS---HGRPLRGETAFSAVFR-----KPLLAAYAVGFCVLFSQVAAFTYAGLYLGLPPF 234
           P S       LR +T F   FR     K L   +  GF ++ S V  F Y G  L L P+
Sbjct: 213 PESRHFRSTSLRPKTLF-INFRLHWRDKGLPLLFLTGFLLMGSFVTLFNYIGYRLMLSPW 271

Query: 235 GLGPAALGTLYTVFLLALIVIPVAGRLSKSRPHAELLSVAAGLGISGSALTLVPSLWCIV 294
            L  A +G L   +L      P AG ++       ++ V+  + + G  +TL  SLW I 
Sbjct: 272 HLSQAVVGLLSVAYLTGTWSSPKAGAMTARFGRGPVMLVSTAVMLLGLLMTLFASLWLIF 331

Query: 295 VGLALSSTGVFLAQAAANAFTAATAGDNKAGAVGMYLTCYYLGGSCGAIVPALIWERWGW 354
            G+ L S G F A + A+++    A   K  A  +YL  YYLG S    +  + W  +GW
Sbjct: 332 AGMLLFSAGFFAAHSVASSWIGPRARRAKGQASSLYLFSYYLGSSFAGTLGGVFWHNYGW 391

Query: 355 AG 356
            G
Sbjct: 392 NG 393



 Score = 27.7 bits (60), Expect = 6e-04
 Identities = 41/208 (19%), Positives = 87/208 (41%), Gaps = 36/208 (17%)

Query: 182 LPASHGRPLRGETAFSAVFRKPLLAAYAVGFCVLFSQVAAFTYAGLYLGLP-------PF 234
           LPA+  +P++     +  F +  LA ++ G           T+A LY   P        F
Sbjct: 18  LPAA-SQPVQFIKRGTPQFMRVTLALFSAGLA---------TFALLYCVQPILPVLSHEF 67

Query: 235 GLGPAALGTLYTVFLLALIV-IPVAGRLSKSRPHAELLSVAAGLGISGSALTLVPSLWC- 292
           G+ PA+     ++    L + +   G LS +    +++  A  L    + L+ + + W  
Sbjct: 68  GVSPASSSISLSISTGMLAIGLLFTGPLSDAIGRKQVMVTALMLASICTLLSTMMTSWHG 127

Query: 293 -----IVVGLALSSTGV----FLAQAAANAFTAATAGDNKAGAVGMYLTCYYLGGSCGAI 343
                 ++GL+LS        +L++    +F A +        +G+Y++   +GG  G +
Sbjct: 128 ILVMRALIGLSLSGVAAVGMTYLSEEIHPSFVAFS--------MGLYISGNSIGGMSGRL 179

Query: 344 VPALIWERWGWAGCVTLIIAFQILTLLI 371
           +  +  + + W   + +I  F + + L+
Sbjct: 180 LSGVFTDFFNWRIALAVIGCFALASALM 207