Pairwise Alignments

Query, 852 a.a., TonB-dependent receptor from Pseudomonas simiae WCS417

Subject, 784 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

 Score = 74.3 bits (181), Expect = 3e-17
 Identities = 149/673 (22%), Positives = 247/673 (36%), Gaps = 133/673 (19%)

Query: 92  TLIKVGSTYVVRPDEGTTTQSGVIQLDALSVIGTGTEVNSSTVGRSTLSQEDIDRYQSNN 151
           TL+ V  + VV+  E T              +     V+  ++     ++ D+D+ +   
Sbjct: 42  TLLPVVLSSVVQAQENTE-----------QAVDETVTVHGQSILTDQRTRSDLDKVRGIA 90

Query: 152 IPSLLQTLPGV-SQGGSLKPGGQTINIRGFGDAEDVPLTVDGATKSGF-ERYQQGT---V 206
              +   +  V S     + G   I IRG      VP+ +DG+ +S    R  QG     
Sbjct: 91  NADIFSGITSVQSNNMHNEAGALDIGIRGVQGEGRVPIFIDGSLQSTHTSRGYQGVSDRT 150

Query: 207 FIEPELIKSIEVEKG---PNSPFTGNGGFGGTVNMTTKDAPDLLKDGRNSGAMLKYGYS- 262
           +I+ +L+ S+ V KG    +SP+  +G  GG VN TT    D++KD +  G +LK   + 
Sbjct: 151 YIDTDLLSSLTVNKGATIESSPY-ASGAVGGVVNATTLGIKDIIKDDQAFGVVLKARANN 209

Query: 263 -------SNDHEQVYSSAVFGRTDDGRF-----------------DALAYLTQRDGDDMK 298
                  S D+ +    A+  R +   F                   LAY  +  G+   
Sbjct: 210 HNRTPDVSGDYSEQGQYALDERGEHSAFKHGSLMLGLGYQAESFNTVLAYSKRSKGNHF- 268

Query: 299 VAAKLPNENNQYPI--NPQRLPNSAQNVDGKLFKV--------NAHFTEEH------AVG 342
            A K   E  Q P+    Q + N++   D  LFK+        NA F   H       V 
Sbjct: 269 -AGKKGYEEYQEPVVGQGQEVVNTSFESDSWLFKLASDTGTAHNADFNYRHHAQKAGEVL 327

Query: 343 LSYSRSHSNRWTPFSAASYPTPPTQANIDRYGYEAALKRFLAHRDTVDTTWSGKYEYTPV 402
           ++Y    S  W        P P  +  + ++G   A             T+S  Y Y P 
Sbjct: 328 MAYWYKSSEDW-----EGNPYPDGKDRMPQWGLGTAKV----------NTYSANYYYQP- 371

Query: 403 DNPLVDLTVKYSQSNTDQTDERDATAFFQLATGGRKMDTAYTD--KNLDVRNVSLFDTGP 460
           D+P ++L   +  +   + D       + L T   +   AY +    L + N +L    P
Sbjct: 372 DHPWLNLNANFWYT---EADLAQYNGLWALGTNAEQYFHAYHNDRSGLSLTNETLLTQWP 428

Query: 461 LQHAVTVGGQIRKHIRETEMWMPGTTYNTPRYNYGHFQPGFMPHGKVDTNSFFVQDAVTL 520
           ++    +  Q  +   E +     T   T R            HGK    + F       
Sbjct: 429 VRLNYGLAQQNERLSPEEDGQTRFTKTVTSR------------HGKRTAQNLFAN----- 471

Query: 521 GDVTITPSMRYDHVRNRGEANDAPYYSNPDPSIGHDYSDRTYTGWSPRLAVF-WTVNPNL 579
            D+  +P +R     N   A    Y +        DY ++        L+ F + + P+ 
Sbjct: 472 ADIDYSP-LRVQLGLNLHNAKSTDYQTKQQ----LDYKEKL-----DLLSEFTYALTPST 521

Query: 580 GLFANWSKTWRAPVIDEQYEVQGLGSRTATSVDLDPERITSISVGSVSSFDNLIAHDDNL 639
            LF   S+T+R P + E      + S    +  + PE+  +  VG      N +  DD L
Sbjct: 522 QLFLKSSRTYRMPSLYETTLSNEVFSYNPYN-PIKPEQAWNNEVGVQFMASNSVLQDDRL 580

Query: 640 QLRTTFFHNKVEDEIFKATGVGCQNQAINGGSISTACPPG-----ALSNYRNIGGLTIKG 694
            L  ++F N ++D              I+GG +  A  PG     A   + N   L + G
Sbjct: 581 NLSVSYFRNSIKD-------------FISGGRL--AKTPGMSEWQANFTFTNYDKLQLSG 625

Query: 695 FELESFYNSTYLF 707
           +EL + Y   +L+
Sbjct: 626 WELGAHYQYAWLY 638