Pairwise Alignments

Query, 485 a.a., multidrug transporter from Pseudomonas simiae WCS417

Subject, 474 a.a., RND efflux system, outer membrane lipoprotein CmeC from Pseudomonas fluorescens FW300-N2E2

 Score =  674 bits (1740), Expect = 0.0
 Identities = 336/469 (71%), Positives = 406/469 (86%), Gaps = 1/469 (0%)

Query: 1   MSKSLLSLAVTAFVLSGCSLIPDYQRPEAPVAAQFPQGPAYSSAQAPSQAAAEQGWKQFF 60
           M++SL+ LA+TA VLSGCSLIP+YQRP+APVAA +PQGPAY +A A  QAA EQGW++FF
Sbjct: 1   MTRSLIGLAITAAVLSGCSLIPEYQRPQAPVAAHYPQGPAYQAANAADQAAVEQGWREFF 60

Query: 61  HDPALQQLIQTALVNNRDLRVAALNIDAYAAQYQIQRADLFPAVSATGSGSRSRTPARLS 120
           HDPALQ+LIQTAL+NNRDL+VAALN++AY AQY+IQRADLFPA+ A  SG+R R P+  S
Sbjct: 61  HDPALQRLIQTALINNRDLKVAALNVEAYRAQYRIQRADLFPAIGANASGTRQRLPSAQS 120

Query: 121 QTGESTISSQYSAGLGISSYELDLFGRVRSLSEEALQKYFATEEARRSTQISLVASVANA 180
           Q G+ +ISSQY   LGISSYELDLFGR+ SLS++AL+ Y +T +ARRS QIS+V+SVANA
Sbjct: 121 QPGQPSISSQYDVNLGISSYELDLFGRIASLSQQALETYLSTAQARRSAQISIVSSVANA 180

Query: 181 YLTWQADKELLKLTQDTLDAYEQSFKLTSRSNEVGVASALDLSQSRTSVENARVALARYT 240
           YLTWQAD+ELLKLT++TL  YE+S +LT+RSN+VGV SALDL+Q+RTSV+ AR +LA Y 
Sbjct: 181 YLTWQADRELLKLTENTLGTYEESLRLTTRSNQVGVVSALDLAQARTSVQGARASLANYQ 240

Query: 241 RQVAQDENSLTLLLGTGLPANITS-KPLSDDLLSEVPAGLPSDLLQRRPDIVQAEYNLKA 299
           R+VA+DEN+L LLLGTGLPA++   + L  DLL+ VPAGLPSDLL RRPDI+ AE++L A
Sbjct: 241 RRVAEDENALVLLLGTGLPADLPEPQSLDGDLLANVPAGLPSDLLVRRPDILAAEHSLLA 300

Query: 300 ANANIGAARAAFFPSITLTASAGTASPNLGGLFKGGSGTWSFAPQINIPIFNAGSLRASL 359
           ANANIGAARAAFFPSI+LTA+AGT+S NL GLFK  SG+W+F+P I++PIFNAG+LRASL
Sbjct: 301 ANANIGAARAAFFPSISLTANAGTSSANLDGLFKSSSGSWAFSPTISLPIFNAGALRASL 360

Query: 360 DYSKIQKEINVANYEKAIQTGFQEVSDGLAARETYKQQLDAQRGFVAANQDYYRLAERRY 419
           DYSKIQK+I VANYEKAIQT FQEVSDGL AR+TY  QL AQ+  V A+QDYY+LAERRY
Sbjct: 361 DYSKIQKDIGVANYEKAIQTAFQEVSDGLTARKTYVDQLQAQKDLVNASQDYYQLAERRY 420

Query: 420 RIGVDSNLTFLDAQRQLFSAQQSLITDRLAQLTSEVNLYKALGGGWNEQ 468
           RIGVDS+LTFLDAQR LFS+QQ LI DRLAQL +EV+LY+ALGGGWNE+
Sbjct: 421 RIGVDSHLTFLDAQRSLFSSQQGLINDRLAQLQAEVSLYRALGGGWNER 469