Pairwise Alignments

Query, 416 a.a., porin from Pseudomonas simiae WCS417

Subject, 418 a.a., outer membrane porin, OprD family. from Pseudomonas stutzeri RCH2

 Score =  244 bits (624), Expect = 3e-69
 Identities = 153/418 (36%), Positives = 229/418 (54%), Gaps = 20/418 (4%)

Query: 9   LLLATAVASLALPVV-AEEHGFLEDASANLNLRNFFFNRNYTNPTKAQGGAQEWTQSFIL 67
           L +A   + +AL    +E  GF+EDAS +L LRN +FNR+Y +     G  + W Q FI 
Sbjct: 11  LAVAAGTSQMALASQQSESKGFVEDASLDLLLRNTYFNRDYKD---GAGDVRSWGQGFIT 67

Query: 68  DAKSGFTQGTVGFGVDVLGLYSLKLDGGRGTGGTQLLPLDHDGRPADEFGRLGVAFKARI 127
             +SGFTQGT+G GVD  GL  ++LDGGRG     +   D +G P  +  + G A KA+ 
Sbjct: 68  TFESGFTQGTIGVGVDAYGLLGVRLDGGRGYTYGAMFERDSNGDPERDLSQAGAAIKAQF 127

Query: 128 SKTEVKVGEWMPVLPILRSDDGRSLPQTLRGGQITSKEIDGLTLYGGQFRANSPRDDSSM 187
           S T +K G   P +P+L  DD R LP++  G  ITS EI+GL L  G+F A+S    SS 
Sbjct: 128 SNTVIKYGNQFPSMPVLAYDDSRLLPESFTGTLITSNEIEGLELNAGRFTADSAMQTSSR 187

Query: 188 NDLSMFGKTAFTSDRFNFQGAEYAFNDKRTQIGLWNAQLKDIYSQQFINLIHSQPLGN-W 246
           + L+   +T  + D     G  YAFND      L+ A  +D+  +++ N+ +  P  +  
Sbjct: 188 DSLNYLDRTLKSIDVI---GGTYAFND-NLSASLYYADNEDVAKKKYANINYVMPFADAQ 243

Query: 247 TLGANLGFFYGKDDGSARAGELDNKTWSGLFSAKY--GGNTFYLGLQKLTGNSAWMRVNG 304
           +L  +   +  K D  A     D   WS   +AKY  G + F L  Q++TG+  +    G
Sbjct: 244 SLAFDFNIYDNKYDKQAFGETQDTTIWS--LAAKYSVGSHAFILAHQRVTGDGNYEYDIG 301

Query: 305 TSGGTL-ANDSYNASYDNAQEKSWQVRHDYNFAALGVPGLTLMNRYISGSNVHTGTVTDG 363
             GG++   +SY + +++  E+SWQ  ++ +F+  GVPGL     Y+ G NV TGT  +G
Sbjct: 302 DGGGSIWVANSYYSDFNSKDERSWQASYELDFSGYGVPGLFWKTAYVYGDNVDTGT-GEG 360

Query: 364 KEWGRESELGYTVQSGSLKNLTVRLRNSSMR-----RDYSNNEFDENRLIVSYPISLL 416
           KE    +++ Y VQSG  K+L+++LRNS  R     R+Y + + +E R  V YP+S+L
Sbjct: 361 KEREFFNQVQYVVQSGPAKDLSLKLRNSIYRSNSDMREYYSPDLNEIRAFVEYPLSIL 418