Pairwise Alignments

Query, 948 a.a., RNA polymerase-associated protein RapA from Pseudomonas simiae WCS417

Subject, 968 a.a., RNA polymerase-associated protein RapA from Klebsiella michiganensis M5al

 Score =  927 bits (2397), Expect = 0.0
 Identities = 502/964 (52%), Positives = 654/964 (67%), Gaps = 30/964 (3%)

Query: 8   GQRWISDSEAELGLGTVLAQDGRLLTVLYPATGDTRQYALRNAPLTRVRFSPGDSITHFE 67
           GQRWISD+E+ELGLGTV+A D R++T+L+PA G+ R YA  ++P+TRV F+PGD+IT  E
Sbjct: 6   GQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYARNDSPITRVMFNPGDTITSHE 65

Query: 68  GWKMTVQEVDDVDGLLVYHG--LNGQNEQVTLPETQLSNFIQFRLASDRLFAGQIDPLAW 125
           GW++ V EV++ +GLL Y G  L+ Q   VTL E  L + + F    DRLFAGQID +  
Sbjct: 66  GWQLQVDEVNEENGLLAYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDR 125

Query: 126 FSLRYHTLEHTSRQLQSSLWGLGGVRAQPIAHQLHIAREVADRIAPRVLLADEVGLGKTI 185
           F+LRY   +  S Q +    GL G R   I HQL+IA +V  R APRVLLADEVGLGKTI
Sbjct: 126 FALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTI 185

Query: 186 EAGLVIHRQLLSGRANRVLILVPENLQHQWLVEMRRRFNLQVALFDEERFIES--DATNP 243
           EAG+++H+QLLSG A RVLI+VPE LQHQWLVEM RRFNL+ +LFD+ER+ E+  DA NP
Sbjct: 186 EAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAINP 245

Query: 244 FEDTQLALVALEWLVDDEKAQDALFAAGWDLLVVDEAHHLVWHEDKVSPEYALVEQLAEV 303
           FE  QL + +L+++   ++  + L  A WDL+VVDEAHHLVW ED  S EY  +EQLAE 
Sbjct: 246 FETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEDAPSREYQAIEQLAER 305

Query: 304 IPGVLLLTATPEQLGQDSHFARLRLLDPNRFHDLQAFRAESENYRPVAEAVQELLDKGRL 363
           +PG+LLLTATPEQLG +SHFARLRLLDPNRFHD   F  E +NYRPVA+AV  LL   +L
Sbjct: 306 VPGILLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQQNYRPVADAVALLLAGNKL 365

Query: 364 SPAAHKTIQGFLGNEG-EALLTAVNDGDTEASA---RLVRELLDRHGTGRVLFRNTRAAV 419
           + A    +   +G +  E LL A N    +A A    LV  L+DRHGT RVLFRNTR  V
Sbjct: 366 NDAELNALSDLIGEQDIEPLLQAANSDRDDAQAARQELVSMLMDRHGTSRVLFRNTRNGV 425

Query: 420 QGFPERKLHAYPLPNPDEYLE-------LPLGEHAE------LYPEVSFQSQPDIEEENR 466
           +GFP+R+LH   LP P +Y         +   + AE      LYPE  +Q      +   
Sbjct: 426 KGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEG--DTGT 483

Query: 467 WWRFDPRVEWLIDQLKMLKRTKVLVICAHAETAMDLEDALRVRSGIPATVFHEGMNILER 526
           WW FDPRVEWL+  L   +  KVLVICA A TA+ LE  LR R GI A VFHEGM+I+ER
Sbjct: 484 WWNFDPRVEWLMGHLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIER 543

Query: 527 DRAAAYFADEEFGAQVLICSEIGSEGRNFQFSHHLVLFDLPSHPDLLEQRIGRLDRIGQK 586
           DRAAA+FA+E+ GAQVL+CSEIGSEGRNFQF+ +LV+FDLP +PDLLEQRIGRLDRIGQ 
Sbjct: 544 DRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQA 603

Query: 587 HVIELHVPYLETSPQERLFQWYHEALNAFLNTCPTGNALQHQFGPRLLPLL---ENADDG 643
           H I++HVPYLE + Q  L +WYHE L+AF +TCPTG  +       L+  L   EN D  
Sbjct: 604 HDIQIHVPYLERTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHNELINYLAAPENTDG- 662

Query: 644 EWQALIDEARAERERLEEELHTGRDRLLELNSGGAGEGDALVEDILEQDDQFALPIYMET 703
            +  LI   R + + L+ +L  GRDRLLE++S G  +   L E I EQDD  +L  +   
Sbjct: 663 -FDELIKACRQQHDALKAQLEQGRDRLLEIHSNGGEKAQQLAESIEEQDDDTSLIAFSMN 721

Query: 704 LFDAFGIDSEDHSENALILKPSEKMLDASFPLGDDEGVTITYDRNQALSREDMQFITWEH 763
           LFD  GI+ +D  EN ++L PS+ ML   FP   ++G TIT++R+ ALSRED QFITWEH
Sbjct: 722 LFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEH 781

Query: 764 PMVQGGMDLVLSGSMGNTAVALIKNKALKPGTVLLELLYVSEVVAPRSLQLGRYLPPAAL 823
           P++  G+DL+LSG  G++ ++L+KNKAL  GT+LLEL+YV E  AP+ LQL R+LPP  +
Sbjct: 782 PLIINGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKHLQLNRFLPPTPV 841

Query: 824 RCLLDANGNDLSSRVSFVTLNDQLESVPRASANKFIQAQRDQLTPRINAGEEKITPQHAE 883
           R LLD NGN+L+ +V F + N QL +V R + +K + A +  +   +  GE ++  + A+
Sbjct: 842 RMLLDKNGNNLAGQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEGQVA-KAAQ 900

Query: 884 RVAEAKRRLAAD-TDEELARLTALQAVNPTVRDSELVALRTQREQGLAMLDKAALRLEAI 942
            + +A R+ A D    EL+RL AL+AVNP +RD EL A+ + R+Q +  L +A  RL+A+
Sbjct: 901 ALIDAARKEADDKLTAELSRLEALRAVNPNIRDDELAAIESNRQQVMDALAQAGWRLDAL 960

Query: 943 RVLV 946
           R++V
Sbjct: 961 RLIV 964