Pairwise Alignments

Query, 306 a.a., LysR family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 308 a.a., NodD1 nod-box dependent transcriptional activator from Sinorhizobium meliloti 1021

 Score =  115 bits (288), Expect = 1e-30
 Identities = 84/289 (29%), Positives = 133/289 (46%), Gaps = 2/289 (0%)

Query: 5   DMNLLVALDALLDEGSVVGAARRMNLSPAAMSRTLTRIREAVGDPILVRAGRGLVPTPKA 64
           D+NLLVALDAL+ E  +  AARR+NLS  AMS  + R+R   GD +    GR L+PTP+A
Sbjct: 7   DLNLLVALDALMTERKLTAAARRINLSQPAMSAAIARLRTYFGDELFSMQGRELIPTPRA 66

Query: 65  LQLQGQVRNVVEQAALLFRSADQVDLSTLRRRFSVRANDFFIGVYGGRLFDTMERMAPLC 124
             L   VR+ +    L   + D ++ +   RRF +  +DF I V+  R+ + + R AP  
Sbjct: 67  EALAPAVRDALLHIQLSVIAWDPLNPAQSDRRFRIILSDFMILVFFARIVERVAREAPGV 126

Query: 125 ELCFVPEGDTDDEALREGRLDLRVSNTMPVTPEVKVQNLFSTTFVGLAREDHPLFDEDIT 184
               +P  D   E LR G +D  +   + ++       LF    V +    +     +I+
Sbjct: 127 SFELLPLDDDPHELLRRGDVDFLIFPDVFMSSAHPKAKLFDEALVCVGCPTNKKLLGNIS 186

Query: 185 AARFASYSHISIS-RRGIARGPIDTALSAQGLERRVAMIAPGFHGAMFMLPDSDLLLPVP 243
              + S  H++    R +        L   G  RR+ ++ PGF     +L  ++ +  +P
Sbjct: 187 FETYMSMGHVAAQFGREMKPSVEQWLLLEHGFNRRIELVVPGFTLIPRLLSGTNRIATLP 246

Query: 244 KEALLSANRLKLPLRSFALPISLPTLVLAQSWHPRFDKDPAHKWLRETM 292
              L+      +PLR    P+       A  W    + DP + WLRE +
Sbjct: 247 LR-LVKYFEQTIPLRIVTSPLPPLFFTEAIQWPALHNTDPGNIWLREIL 294