Pairwise Alignments

Query, 306 a.a., LysR family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 313 a.a., NodD3 nod box-dependent transcriptional activator from Sinorhizobium meliloti 1021

 Score =  114 bits (284), Expect = 4e-30
 Identities = 84/291 (28%), Positives = 134/291 (46%), Gaps = 6/291 (2%)

Query: 5   DMNLLVALDALLDEGSVVGAARRMNLSPAAMSRTLTRIREAVGDPILVRAGRGLVPTPKA 64
           D+NLLVALDAL+ + SV  AAR +NLS  AMS  + R+R    D +    GR L+ TP+A
Sbjct: 7   DLNLLVALDALMTKRSVTAAARSINLSQPAMSSAIARLRSYFQDELFRMQGRELITTPRA 66

Query: 65  LQLQGQVRNVVEQAALLFRSADQVDLSTLRRRFSVRANDFFIGVYGGRLFDTMERMAPLC 124
             L   +R+ +        S D  + +   R F +  +DF   V+  ++ + + R AP  
Sbjct: 67  EALAPAIRDALLHIQFSIISWDMFNPAQSDRCFRIILSDFMTLVFFEKVVERVAREAPGV 126

Query: 125 ELCFVPEGDTDDEALREGRLDLRVSNTMPVTPEVKVQNLFSTTFVGLAREDHPLFDEDIT 184
               +P  D  DE LR G +D  +   + ++       LF  T V +    +     D++
Sbjct: 127 SFELLPPDDNPDELLRRGEVDFLIFPDVFMSSVHPKAKLFDQTLVSVGCLTNEQLLGDLS 186

Query: 185 AARFASYSHISIS-RRGIARGPIDTALSAQGLERRVAMIAPGFHGAMFMLPDSDLLLPVP 243
             R+ S  H++    R +        L   G +RR+ ++ PGF+    +L  +  +  +P
Sbjct: 187 FERYMSMGHVAAQFGRALKPSVEQWLLLEHGYKRRIELVVPGFNLIPPLLSGTKRIAIIP 246

Query: 244 KEALLSANRL--KLPLRSFALPISLPTLVLAQSWHPRFDKDPAHKWLRETM 292
              L  AN     +PLR    P+ L +   A  W    +KD A  W+RE +
Sbjct: 247 ---LRLANHFAKSIPLRIVKHPLPLLSFTEAVQWPALHNKDQASIWMREIL 294