Pairwise Alignments

Query, 306 a.a., LysR family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 310 a.a., NodD2 nod box-dependent transcription activator from Sinorhizobium meliloti 1021

 Score =  117 bits (293), Expect = 3e-31
 Identities = 84/289 (29%), Positives = 136/289 (47%), Gaps = 2/289 (0%)

Query: 5   DMNLLVALDALLDEGSVVGAARRMNLSPAAMSRTLTRIREAVGDPILVRAGRGLVPTPKA 64
           D+NLLVALDAL+ E  +  AARR+ LS  AMS  + R+R   GD +    GR L+PTP+A
Sbjct: 7   DLNLLVALDALMTERKLTAAARRVKLSQPAMSAAIARLRTYFGDELFSMQGRELIPTPRA 66

Query: 65  LQLQGQVRNVVEQAALLFRSADQVDLSTLRRRFSVRANDFFIGVYGGRLFDTMERMAPLC 124
             L   VR+ +    L   + D ++ +   RRF +  +DF   V+  R+ + + R AP  
Sbjct: 67  EALAPAVRDALLHIQLSVIAWDPINPAQSDRRFRIILSDFMTLVFFERVVERLAREAPGV 126

Query: 125 ELCFVPEGDTDDEALREGRLDLRVSNTMPVTPEVKVQNLFSTTFVGLAREDHPLFDEDIT 184
               +P  D   E LR G +D  V   + ++       LF+   V +    +     +++
Sbjct: 127 SFELLPLDDDPYELLRRGDVDFLVLPDLFMSSAHPKAKLFAEALVCVGCPTNEQLLGELS 186

Query: 185 AARFASYSHISIS-RRGIARGPIDTALSAQGLERRVAMIAPGFHGAMFMLPDSDLLLPVP 243
             ++ S  H++    R +        L   G +RRV ++ PGF     +LP ++ +  +P
Sbjct: 187 FEKYMSMGHVAAQFGRALKPSFEQWLLLEHGFKRRVELVVPGFTLIPPLLPHTNRIAIIP 246

Query: 244 KEALLSANRLKLPLRSFALPISLPTLVLAQSWHPRFDKDPAHKWLRETM 292
              L+      +PLR    P+       A  W    +KDP + W+RE +
Sbjct: 247 LR-LVKYFEQTIPLRIVKHPLPPLWFTEAVQWPALHNKDPGNIWMREIL 294