Pairwise Alignments

Query, 242 a.a., amino acid ABC transporter permease from Pseudomonas simiae WCS417

Subject, 246 a.a., ABC transporter from Vibrio cholerae E7946 ATCC 55056

 Score =  223 bits (567), Expect = 4e-63
 Identities = 118/245 (48%), Positives = 162/245 (66%), Gaps = 20/245 (8%)

Query: 14  LSLKGFGPLLLQGTWMTIKLSVLSLAVSVLLGLLGASAKLSSLPFLRIPAQLYTTLIRGV 73
           L L+G+   +L+G  +TI+++VLSL +++LLG+LGA AK++   + R  A LYTT+IRG+
Sbjct: 2   LDLQGYEASILKGALLTIEVAVLSLLLAMLLGMLGALAKMAPYRWARAIATLYTTIIRGI 61

Query: 74  PDLVLMLLIFYS---------------LQTWLTGLTDFMEW-----EYIEIDPFSAGVIT 113
           PDLVLM+LIF+                +  WLT      EW     +Y++I PF AGV+T
Sbjct: 62  PDLVLMMLIFFGGQILLNNGLSWFNEFINQWLTARDPNHEWVAYLPDYVDISPFVAGVLT 121

Query: 114 LGFIYGAYFTETFRGAILAVPRGQLEAATAYGLKRGQRFRYVTFPQMMRFALPGIGNNWM 173
           +GFI+GAY  ETFRGAILAV +G+LEAA AYG+     FR +  PQM+R A+PG GNNW+
Sbjct: 122 IGFIFGAYMAETFRGAILAVDKGELEAAKAYGMSAAMSFRRILLPQMIRHAIPGFGNNWL 181

Query: 174 VMLKATALVSIIGLADLVKAAQDAGKSTYQLFYFLVLAALIYLLITSASNFVLRRLERRY 233
           V+LK TALVSIIGL D+V+ +  A  ST   F F +  A+I+L  TS S  +L+ LER++
Sbjct: 182 VLLKTTALVSIIGLEDMVRISSLAAGSTKMPFTFYMAVAIIFLFFTSVSTGLLKLLERKF 241

Query: 234 SAGAR 238
           S   R
Sbjct: 242 SIHTR 246