Pairwise Alignments

Query, 236 a.a., amino acid ABC transporter permease from Pseudomonas simiae WCS417

Subject, 229 a.a., amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family from Pseudomonas stutzeri RCH2

 Score =  154 bits (389), Expect = 1e-42
 Identities = 88/221 (39%), Positives = 130/221 (58%), Gaps = 2/221 (0%)

Query: 9   WRPFLYSDGQHITGLAMTMWLLTTALVIGFLVSIPLSIARVSRKRLVRWPVQFYTYLFRG 68
           W  F+      I G  +T+ L+  +++ G +V++PL IAR SR   VR     Y + FRG
Sbjct: 3   WEIFIKWLPSFIDGAWLTLQLVGVSVIAGLIVAVPLGIARSSRHLAVRALPYGYIFFFRG 62

Query: 69  TPLYIQLLICYTGIYSLAAVREQPLLDAFFRDAMNCTILAFALNTCAYTTEIFAGAIRSM 128
           TPL +QL + Y G+     VR+  L   + RD   C I+   L+T AY  EI  GAI+++
Sbjct: 63  TPLLVQLFLVYYGMAQFDVVRQSALWP-YLRDPYWCAIITMTLHTAAYIAEIIRGAIQNV 121

Query: 129 AHGEVEAAKAYGLSGWKLYAYVIMPSALRRSLPYYSNEVILMLHSTTVAFTATIPDILKV 188
            HGE+EAA+A G+S  +   ++I+P A R  LP YSNEVILML ++ +A T T+ ++  +
Sbjct: 122 PHGEIEAARALGMSRSQALLHIILPRATRIGLPAYSNEVILMLKASALASTITLLELTGM 181

Query: 189 ARDANSATFMTFQSFGIAALIYLTVTFALVGLFRLAERRWL 229
           AR   + T++  + F  A LIYL + F L+  F+L E RWL
Sbjct: 182 ARKIAARTYLHEEMFLTAGLIYLLIAFILMQGFKLLE-RWL 221