Pairwise Alignments

Query, 826 a.a., DEAD/DEAH box helicase from Pseudomonas simiae WCS417

Subject, 1475 a.a., Lhr-like helicases from Pseudomonas stutzeri RCH2

 Score =  213 bits (542), Expect = 6e-59
 Identities = 235/897 (26%), Positives = 375/897 (41%), Gaps = 106/897 (11%)

Query: 11  WFAAKGWKPFAFQKEVWAAVKSGQSGLLHASTGAGKTYALWFAALNRFAIARPPVTAKRK 70
           WF+     P   Q   W  +++G+S L+ A TG+GKT   + AA++              
Sbjct: 42  WFSRSFPAPTPAQAAAWPLIRAGRSTLVAAPTGSGKTLTAFLAAIDGLV----QQGLAEG 97

Query: 71  PPAEPLTVLWITPMRALAADTARALEAPLEALQIPWS----------VGLRTGDTSSSER 120
             A+   VL+++P++AL+ D    LE PL  +    +            +RTGDT  +ER
Sbjct: 98  GLADATRVLYVSPLKALSNDIHINLEEPLAGITAELARLGLPPLEIRTAVRTGDTPQAER 157

Query: 121 ARQTRRQPTVLVTTPESLTLMLARADSEVSLAHLRMVVVDEWHELIGNKRGVQLQLALAR 180
               +R P +LVTTPESL ++L+ A     LA ++ V+VDE H + GNKRG  L L+L R
Sbjct: 158 NAMRKRVPHILVTTPESLYVLLSSASGREMLADVQSVIVDEIHAIAGNKRGSHLALSLER 217

Query: 181 LRRW-HPDLMVWGISAT---LGNQAHALEVLVPQGDGINVQGQTAKQLIIDTLLPPVTER 236
           L    +  L+  G+SAT   +   A  L  +    + +++    A+ L ++  +P V   
Sbjct: 218 LEALCNRPLVRVGLSATQKPIDAVARFLAGVERPCEIVDIGHGRARDLALE--VPSVPLE 275

Query: 237 FPWAGHIGLKMLPQVVAEVDASSSCLVFTNTRAQSEIWFQALLDARPDWAGVIALHHGSL 296
              +      +  ++ A      + LVF NTR  +E   + L +     A V+A HHGSL
Sbjct: 276 AVMSNDAWALVYDRLAALAGEHRTTLVFVNTRRMAERTTRHLAERLG--AEVVAAHHGSL 333

Query: 297 SRETRDWVERALKDGQLKAVVCTSSLDLGVDFLPVERVLQIGSAKGVARLMQRAGRSGHA 356
           +RE R   E+ LK G+L+ +V T+SL+LG+D   VE V Q+GS + ++  +QR GR+GH 
Sbjct: 334 AREQRLSAEQKLKRGELRVLVATASLELGIDIGDVELVCQLGSPRSISAFLQRVGRAGHQ 393

Query: 357 PGRPSRVTLVPTHSLELVEAAAAQDAIAQRRIEARESPYKPLDVLVQHLVSMALGGGYKP 416
               S+  L P    +L+E AA  DA+ +  ++  + P  PLDVL Q +V+      ++ 
Sbjct: 394 VAGVSKGRLFPGSRDDLIECAALFDAVRRGELDTLKIPQAPLDVLAQQIVAEVACREWEE 453

Query: 417 DDLLVEVRGAWAYHDLTDEDWAWALGFV------RHGGLSLTAYPDYRRVEPDEHGIWRV 470
             LL  +R A  Y  L +  +   L  +      RHG      + D              
Sbjct: 454 GALLQLLRRAMPYAALDEATFQALLRMLAEGYTTRHGTRGAYLHRDL-----------AT 502

Query: 471 PDARLARRHRM----SVGTIVSDASIHLKFWSKGGGGKNLGSVEEGFIARLKPGDGFLFA 526
              R  R  R+    S GTI  +A   +    +   G N+G+V E F      GD F   
Sbjct: 503 RSLRGRRGGRLTALTSGGTIADNADYAVLLEPQ---GLNIGTVNEDFAIESLAGDVFQLG 559

Query: 527 GRLLELVRVENMTAYVRRSNAKKAAVPRWNGGRMPLSNELAQAVVERFD----------A 576
                ++++E+    V  +     ++P W G     S+EL+ AV    D           
Sbjct: 560 NTSYRILKIESGRVRVEDAQGMPPSIPFWLGEAPGRSDELSFAVARLRDEIDRRLHDAAT 619

Query: 577 AAQGHFEGPEM---------------------------QAVRPLLQTQVRWSGLPTREHL 609
           AA    + P +                           Q V  L + +     LPT++ L
Sbjct: 620 AADDAAKSPGVVSSASSRLAPAIDWLTGSLGLSDDAARQIVEYLARARSALGALPTQQRL 679

Query: 610 LAEALKSRE-GWHLFLYPFAGRQVHLGLASLLAWRVSQGQAVTFSIAVNDYGLELLSATE 668
           + E       G  L ++   G +++      L  R  +        A  +  + L  +T 
Sbjct: 680 VMERFFDEPGGTQLVIHSPYGSRINRAWGLALRKRFCRTFNFELQAAATEDAIILSLSTS 739

Query: 669 VNWPALLNEALLSPEHLLEDVVASLNAGELALRRFREIARIAGLVFAGYPGAPKSTRQVQ 728
            ++P       L      + ++ +L    L   R+R IA  A L      G  K   Q+Q
Sbjct: 740 HSFPLADVWRYLHSASAEQVLIQALLDAPLFGVRWRWIATTA-LALPRMAGGRKVAPQLQ 798

Query: 729 --ASSGLFFEVF------------KQYDPQNLLLTQAGEEVLRDELDIRRLEQTLRHLCA 774
              S  L   VF            ++  P + L+ Q  ++ L + +D       LR +  
Sbjct: 799 RMKSEDLLATVFPDQVACLENIVGEREIPDHPLVRQTLDDCLHEAMDSEGWLALLRRMER 858

Query: 775 LKLEL--HRIQRPTPLAFPLLVERMRESMSSEKLSER-----IARMVKDLEKVADNG 824
            ++EL    +  P+PLA  +L  R    +    L ER     +AR   D E   D G
Sbjct: 859 GEIELLARDLPAPSPLAMEILGARPYAFLDDAPLEERRTQAVLARRWSDPESSDDLG 915