Pairwise Alignments

Query, 826 a.a., DEAD/DEAH box helicase from Pseudomonas simiae WCS417

Subject, 556 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score = 68.6 bits (166), Expect = 9e-16
 Identities = 93/383 (24%), Positives = 160/383 (41%), Gaps = 40/383 (10%)

Query: 18  KPFAFQKEVWAAVKSGQSGLLHASTGAGKTYALWFAALNRFAIARPPVTAKRKPPAEPLT 77
           +P   Q +    +  G   +  A TG GKT A        FA+   P+ +K  P  + + 
Sbjct: 28  EPSPIQSQAIPVILGGHDMIGQAQTGTGKTAA--------FAL---PILSKIDPARKEVQ 76

Query: 78  VLWITPMRALAADTARALEAPLEALQIPW-SVGLRTGDTSSSERARQTRRQPTVLVTTPE 136
            L + P R LA   A A E    + Q+P  +V    G      + +  R+   V+V TP 
Sbjct: 77  ALILAPTRELALQVATAFET--YSKQMPGLTVVAVYGGAPMGPQLKAIRQGAQVIVATPG 134

Query: 137 SLTLMLARADSEVSLAHLRMVVVDEWHELIGNKRGVQLQLALARLRRWHPDLMVWGISAT 196
            L   L+R    +S   +R +V+DE  E++       L++    +      ++    SAT
Sbjct: 135 RLVDHLSRNSGLLST--IRFLVLDEADEMLKLGFMDDLEVIFEAMPESRQTVL---FSAT 189

Query: 197 LGNQAHAL---EVLVPQGDGINVQGQTAKQLIIDTLLPPVTERFPWAGHIGLKMLPQVVA 253
           L +   A+    +  PQ   I  + QT  ++    L+    ++        L++L     
Sbjct: 190 LPHSIRAIAEKHLREPQHIKIAAKTQTVARIEQAHLMVHADQKIQAV----LRLL----- 240

Query: 254 EVDASSSCLVFTNTRAQSEIWFQALLDARPDWAGVIALHHGSLSRETRDWVERALKDGQL 313
           EV+   + + F  T+ Q+ +   A L+A+   A  +   +G +++  R+ V  +LKDG+L
Sbjct: 241 EVEDFDALIAFVRTK-QATLDLAAALEAKGYKAAAL---NGDIAQNQRERVIESLKDGRL 296

Query: 314 KAVVCTSSLDLGVDFLPVERVLQIGSAKGVARLMQRAGRSGHAPGRPSRVTLVPT----H 369
             VV T     G+D   +  V  +         + R GR+G A GR  R  L+ T     
Sbjct: 297 DIVVATDVAARGLDVARITHVFNVDMPYDPESYVHRIGRTGRA-GREGRALLLVTPRERR 355

Query: 370 SLELVEAAAAQDAIAQRRIEARE 392
            L+++E    Q     R   A++
Sbjct: 356 MLQVIERVTNQKVAEARLPNAQQ 378