Pairwise Alignments

Query, 826 a.a., DEAD/DEAH box helicase from Pseudomonas simiae WCS417

Subject, 849 a.a., DNA damage response helicase, ligase-associated (from data) from Sinorhizobium meliloti 1021

 Score =  428 bits (1100), Expect = e-124
 Identities = 299/841 (35%), Positives = 430/841 (51%), Gaps = 47/841 (5%)

Query: 10  RWFAAKGWKPFAFQKEVWAAVKSGQSGLLHASTGAGKTYALWFAALNRFAIARPPVTAK- 68
           RWFA KGW+P A Q E+ +  ++G+S LL A TGAGKT A +  +L         +T + 
Sbjct: 25  RWFAEKGWRPRAHQLELLSRAEAGESTLLIAPTGAGKTLAGFLPSL-------VDITRRG 77

Query: 69  RKPPAEPLT---VLWITPMRALAADTARALEAPLEALQIPWSVGLRTGDTSSSERARQTR 125
           R PP  P T    L+I+P++ALA D  R L  P+  + +P S+  RTGDT   +R RQ  
Sbjct: 78  RIPPGAPFTGIHTLYISPLKALAVDIERNLMKPVGEMGLPVSIENRTGDTPQGKRQRQKL 137

Query: 126 RQPTVLVTTPESLTLMLARADSEVSLAHLRMVVVDEWHELIGNKRGVQLQLALARLRRWH 185
             P +L+TTPE L L+LA  ++E     LR VV+DE H L+ +KRG  L L LARLRR  
Sbjct: 138 NPPDILLTTPEQLALLLANGEAERFFKDLRYVVLDELHSLVMSKRGHLLSLGLARLRRLA 197

Query: 186 PDLMVWGISATLGNQAHALEVLVPQ-------GDGINVQGQTAKQLIIDTLLPPVTERFP 238
           P L   G+SAT+ +       LV Q          I V G    ++ I         + P
Sbjct: 198 PRLQTMGLSATVADPMDLQRWLVAQFLAKENHAGLITVSGGAKPEISI----LRTENQVP 253

Query: 239 WAGHIGLKMLPQVVAEVDASSSCLVFTNTRAQSEIWFQALLDARPDWAGVIALHHGSLSR 298
           WAGH     +P V A +    + L+F NTR+Q+E+ FQ L     D    IALHHGSL  
Sbjct: 254 WAGHSARYAIPDVYAAIKEHRTTLLFVNTRSQAEMLFQELWKINDDDL-PIALHHGSLDV 312

Query: 299 ETRDWVERALKDGQLKAVVCTSSLDLGVDFLPVERVLQIGSAKGVARLMQRAGRSGHAPG 358
             R  VE A+ + +L+AVV TS+LDLG+D+  V+ V+ +G+ KG +RL QR GR+ H   
Sbjct: 313 AQRRRVEAAMAENRLRAVVATSTLDLGIDWGDVDLVVHVGAPKGASRLAQRIGRANHRMD 372

Query: 359 RPSRVTLVPTHSLELVEAAAAQDAIAQRRIEARESP---YKPLDVLVQHLVSMALGGGYK 415
            PSR  LVP +  E++E  AA DA     + A+++P      LDVL QH++ MA    + 
Sbjct: 373 EPSRAILVPANRFEVMECQAALDA---NYVGAQDTPSIGKGALDVLAQHILGMACAQPFD 429

Query: 416 PDDLLVEVRGAWAYHDLTDEDWAWALGFVRHGGLSLTAYPDYRRVEPDEHGIWRVPDARL 475
             +L  EV  A  Y  L  E +  A+  V  GG +L  Y  Y R+   + G+WRV +  +
Sbjct: 430 ALELYEEVISAAPYARLAWETFERAVDLVATGGYALRTYERYARIRKTKDGLWRVSNPMV 489

Query: 476 ARRHRMSVGTIVSDASIHLKF------WSKGGGGKNLGSVEEGFIARLKPGDGFLFAGRL 529
           A+++R++VGTIV    ++++        S G GG +LG VEE F+  L PGD FLF+G++
Sbjct: 490 AQQYRLNVGTIVESPMLNIRMVKRNQRGSLGRGGMSLGKVEESFLEMLSPGDTFLFSGKV 549

Query: 530 LELVRVENMTAYVRRSNAKKAAVPRWNGGRMPLSNELAQAVVERFDAAAQGHFEGPEMQA 589
           L    +      V ++ +    VP + GG+ PLS  LA A V +  A        P+   
Sbjct: 550 LRFEGIRENECLVSQAFSFDPKVPSYAGGKFPLSTYLA-AQVRKMLADPARRAGLPDQ-- 606

Query: 590 VRPLLQTQVRWSGLPTREHLLAEALKSREGWHLFLYPFAGRQVHLGLASLLAWRVSQGQA 649
           VR  L  Q   S LP  + LL E        ++ +Y F GR  H  L  LL  R+ +   
Sbjct: 607 VRDWLALQGDVSMLPRDDELLIETFPRGSRHYMVIYAFEGRLAHQTLGMLLTRRLDRAGL 666

Query: 650 VTFSIAVNDYGL------ELLSATEVNWPALLNEALLSPEHLLEDVVASLNAGELALRRF 703
                   DY L      ++ +A     P+L    L   + L +D+ A LN   L  R F
Sbjct: 667 KPLGFVATDYSLAVWALDDMGAAFRARAPSL--GQLFDEDMLGDDLEAWLNESFLLKRTF 724

Query: 704 REIARIAGLVFAGYPGAPKSTRQVQASSGLFFEVFKQYDPQNLLLTQAGEEVLRDELDIR 763
           R  A IAGL+   +PG  K+ RQ+  S+ L ++V + ++P ++LL     +     LDI 
Sbjct: 725 RNCAVIAGLIEQRHPGREKTGRQITVSADLIYDVLRAHEPDHILLEATRNDAATGLLDIG 784

Query: 764 RLEQTLRHLCALKLELHRIQRPTPLAFPLLVERMRESMSSEKLSERIARMVKDLEKVADN 823
           RL   L+ +    +   R+ + +PLA P+++E  RES+  E     +     DL   A  
Sbjct: 785 RLGSMLKRIKG-HITHRRLDQISPLAIPVMLEIGRESVHGEAQDFLLTEAADDLINEAMG 843

Query: 824 G 824
           G
Sbjct: 844 G 844