Pairwise Alignments

Query, 826 a.a., DEAD/DEAH box helicase from Pseudomonas simiae WCS417

Subject, 855 a.a., ATP-dependent helicase from Methanococcus maripaludis S2

 Score =  249 bits (636), Expect = 5e-70
 Identities = 218/825 (26%), Positives = 395/825 (47%), Gaps = 70/825 (8%)

Query: 33  GQSGLLHASTGAGKTYALWFAALNR-FAIARPPVTAKRKPPAEPLTVLWITPMRALAADT 91
           G++ L+ + TG+GKT + + A +N  F I       K +     +  L+I+P+++LA D 
Sbjct: 29  GRNTLICSPTGSGKTLSSFIAIINELFRIE------KEEGLQNSIYCLYISPLKSLANDI 82

Query: 92  ARALEAPL-EALQIPWSVG---------LRTGDTSSSERARQTRRQPTVLVTTPESLTLM 141
              L+ PL E  +I    G         +R GDTS+ E+++  ++ P +L TTPE+L ++
Sbjct: 83  HVNLDEPLTEIKEILKEEGNEITGIRHAIRHGDTSNYEKSKMLKKTPHILNTTPETLAII 142

Query: 142 LARADSEVSLAHLRMVVVDEWHELIGNKRGVQLQLALARLRRW-HPDLMVWGISATLGNQ 200
           L     +  L  ++ V++DE H L  NKRGV L ++L RLR   + + +  G SAT+   
Sbjct: 143 LNSPKFKEKLKTVQWVIIDEIHALADNKRGVHLSISLERLRELTNQEFLRIGCSATV--- 199

Query: 201 AHALEVLVPQGDGINVQGQTAKQLIIDT---------LLPPVTERF-PWAGHIGLKMLPQ 250
              LE++     G    G      I+DT         LL PV +        I  K+  +
Sbjct: 200 -EPLEMVADYLGGYYDDGYKRPVEIVDTRFVRGYDLKLLCPVDDLINKTPKEISEKLYEK 258

Query: 251 VVAEVDASSSCLVFTNTRAQSEIWFQALLDARPDWAGVI--ALHHGSLSRETRDWVERAL 308
           +   +    + L+FTNTR  +E     L    P+         HHGSLS+E R  +E  L
Sbjct: 259 LDRLIQTHENTLIFTNTRGGAERVLYNLRKRYPEKYDETNSGCHHGSLSKEKRLELEEKL 318

Query: 309 KDGQLKAVVCTSSLDLGVDFLPVERVLQIGSAKGVARLMQRAGRSGHAPGRPSRVTLVPT 368
           K G LK    +SSL+LG+D   ++ V+QIGS K V  ++QR GR+GH  G+ ++  ++  
Sbjct: 319 KSGNLKFATTSSSLELGIDMPYIDLVVQIGSPKSVKTMLQRIGRAGHGIGKVAKGRIIAL 378

Query: 369 HSLELVEAAAAQDAIAQRRIEARESPYKPLDVLVQHLVSMALGGGYKPDDLLVEVRGAWA 428
              EL+E A          I+    P  PLDVL+QH+  +A+ G  + + +   VR ++ 
Sbjct: 379 DRDELLECAVMLKKAMDGFIDKVHIPKGPLDVLIQHIYGIAINGYIELERVKNIVRRSYN 438

Query: 429 YHDLTDEDWAWALGFVRHGGLSLTAYPDYRRV--EPDEHGIWRVPDARLARR-HRMSVGT 485
           YHD+TDED+   + ++      +     Y ++  +PD   I +    + AR  + M++GT
Sbjct: 439 YHDITDEDFKILINYMTASYAGMDEKRIYSKIWYDPDTQMIGKT--GKTARAIYYMNIGT 496

Query: 486 IVSDAS--IHLKFWSKGGGGKNLGSVEEGFIARLKPGDGFLFAGRLLELVRVENMTAYVR 543
           I  D S  ++L+     G    +G ++E ++ RL+ GD F   G  L+         YV 
Sbjct: 497 IPDDFSCDVYLR-----GTTIWIGKLDEQYLDRLEKGDVFTLGGEHLKFQYRRGSKVYVD 551

Query: 544 RSNAKKAAVPRWNGGRMPLSNELAQAVV-------------ERFDAAAQGHFEGPEMQAV 590
           ++ +++  +P W   R+PLS +L + ++                D  ++   +    +++
Sbjct: 552 KT-SERPNIPSWYSERLPLSYDLGRNILLFKKEAVSKYNAGRLLDLLSEYPLDSNATKSL 610

Query: 591 RPLLQTQVRWSG---LPTREHLLAEALKSREGWHLFLYPFAGRQVHLGLASLLAWRVSQG 647
             L   Q+ + G   + T   ++ E     +  H + +   GR+ + G +  +A+ +S+ 
Sbjct: 611 YGLFNEQILYKGNDSVSTLNKMVVEGHIFDKKMHYYFHSNYGRKFNDGFSRAVAYALSKQ 670

Query: 648 QAVTFSIAVNDYG--LELLSATEVNWPALLNEALLSPEHLLEDVVASLNAGELALRRFRE 705
             +   ++++D G  LE     +V+  + +    L+PE++ + +  +L    L  R FR 
Sbjct: 671 YKLGVLVSISDTGFSLEFAKNQKVDIESAIRS--LTPENIKDVLKQALEGTNLLKRMFRI 728

Query: 706 IARIAGLVFAGYPGAPKSTRQVQASSGLFFEVFKQYDPQNLLLTQAGEEVLRDELDIRRL 765
            A  + ++   Y G  KS ++ Q S+ +     K  D +   L +   E++ D L++  +
Sbjct: 729 NATRSLMILRNYIGHKKSAKKQQVSADILISYAKSLD-RFAPLEETLREIIEDSLELDNI 787

Query: 766 EQTLRHLCALKLELHRIQ--RPTPLAFPLLVERMRESMSSEKLSE 808
            + L  + + KL+++ I    PTP++F +      +S+ +E  ++
Sbjct: 788 REVLGEIRSGKLKINVIDVPIPTPMSFGIATLTASDSVLAENKNQ 832