Pairwise Alignments

Query, 278 a.a., peptigoglycan-binding protein LysM from Pseudomonas simiae WCS417

Subject, 260 a.a., Lipoprotein NlpD from Xanthomonas campestris pv. campestris strain 8004

 Score =  196 bits (497), Expect = 6e-55
 Identities = 117/266 (43%), Positives = 158/266 (59%), Gaps = 30/266 (11%)

Query: 22  LVFSSVLVGCSS-----SPSSGARV-VDRNNAVPQKPTVTTGQYV-VRKGDTMFSIAFRY 74
           LV ++ L  CSS     SP+SG+     R +A P+      G  V V++GDT+++I+ R 
Sbjct: 16  LVVAAGLTACSSATVVRSPNSGSGGGASRPSAAPRPSVPRPGATVTVQRGDTLYAISRRT 75

Query: 75  GWDYKALAARNNIPVPYTIHPGQTIRFDGRTGSTPTTVVTNTGSSPSSSSKTTIITRPAG 134
                 LAA N +  P TI+PGQT++      S P        S+P +S  T +  RPA 
Sbjct: 76  NITAPDLAAWNGLSSPNTIYPGQTLKLYPPGASKPGA------SAPVASGGTVVPPRPAA 129

Query: 135 TAKPASAAKPAPAPLPPAGPAPTG--WGWPSNGVLIGKFSSNGSLNKGIDIAGDLGQPVL 192
                          P A P  +G  W WP++GV++G F +  +  +G+DIAG  GQ V 
Sbjct: 130 ---------------PIAAPVSSGFSWRWPADGVVVGTFVTGETTKQGVDIAGASGQAVR 174

Query: 193 AASDGTVVYAGSGLRGYGELVIIKHSDTYVSAYGHNRRLLVREGQQVKVGQTIAEMGSTG 252
           AA+DG VVY+G+GL GYGEL+IIKH+D ++SAYGHNR+ L+ EGQ VK GQ IAEMG +G
Sbjct: 175 AAADGVVVYSGAGLVGYGELIIIKHNDQWLSAYGHNRKRLLNEGQSVKAGQQIAEMGRSG 234

Query: 253 TDRVKLHFEIRRQGKPVDPLQFLPRR 278
             R  LHFEIR  GKPVDPL +LP++
Sbjct: 235 AARDMLHFEIRYNGKPVDPLLYLPKK 260