Pairwise Alignments

Query, 278 a.a., peptigoglycan-binding protein LysM from Pseudomonas simiae WCS417

Subject, 288 a.a., Peptidoglycan-binding LysM:Peptidase M23B from Pseudomonas syringae pv. syringae B728a

 Score =  412 bits (1060), Expect = e-120
 Identities = 213/289 (73%), Positives = 235/289 (81%), Gaps = 12/289 (4%)

Query: 1   MSLTGLAQRMSKTSFHRLVLGLVFSSVLVGCSSSPSSGARVVDRN-NAVPQKPTVTTGQY 59
           MSLT + Q  S  S+ RLV+G+  S +LVGCSSSPS G RVVDRN NAV Q+PTVTTGQY
Sbjct: 1   MSLTVIQQLRSSRSYQRLVIGIALSVLLVGCSSSPSGGVRVVDRNGNAVAQRPTVTTGQY 60

Query: 60  VVRKGDTMFSIAFRYGWDYKALAARNNIPVPYTIHPGQTIRFDGRTGSTPTTV------- 112
           VVR+GDT+FSIAFRYGWD+KALAARN IP P+TI PGQTIRFDGR+ STP  V       
Sbjct: 61  VVRRGDTLFSIAFRYGWDWKALAARNQIPEPFTIKPGQTIRFDGRSSSTPNVVSTSGAGR 120

Query: 113 -VTNTGSSPSSSS--KTTIITRPAGTAKPASAAKPAPAPLPPAGPAPTGWGWPSNGVLIG 169
            VT+T +S  SS   KTT++++P     P      A     PAG +PTGW WPS+G+LIG
Sbjct: 121 PVTSTSTSTGSSGSVKTTVMSKPVAVV-PVVIPPSATTGTGPAGKSPTGWTWPSSGILIG 179

Query: 170 KFSSNGSLNKGIDIAGDLGQPVLAASDGTVVYAGSGLRGYGELVIIKHSDTYVSAYGHNR 229
           KFSSNGSLNKGIDIAGDLGQPVLAASDG+VVYAGSGLRGYGEL+IIKHSDTYVSAYGHNR
Sbjct: 180 KFSSNGSLNKGIDIAGDLGQPVLAASDGSVVYAGSGLRGYGELIIIKHSDTYVSAYGHNR 239

Query: 230 RLLVREGQQVKVGQTIAEMGSTGTDRVKLHFEIRRQGKPVDPLQFLPRR 278
           RLLVREGQQVK GQTIAEMGSTGTDRVKLHFEIRRQGKPVDPL FLPRR
Sbjct: 240 RLLVREGQQVKAGQTIAEMGSTGTDRVKLHFEIRRQGKPVDPLGFLPRR 288