Pairwise Alignments

Query, 278 a.a., peptigoglycan-binding protein LysM from Pseudomonas simiae WCS417

Subject, 296 a.a., lipoprotein NlpD (RefSeq) from Shewanella amazonensis SB2B

 Score =  186 bits (471), Expect = 7e-52
 Identities = 115/284 (40%), Positives = 152/284 (53%), Gaps = 32/284 (11%)

Query: 27  VLVGCSSSPSSGARVVDRNNA---VPQKPTVTTGQYVVRKGDTMFSIAFRYGWDYKALAA 83
           +L GCS    S A V   N+    V  K ++T+  Y V+KGDT++SIA+  G DY  LA 
Sbjct: 13  LLAGCSMQAHSPAPVESLNSKKKPVHPKGSLTSSTYKVKKGDTLYSIAWGAGTDYHELAK 72

Query: 84  RNNIPVPYTIHPGQTIRFDGRTGSTPTTVVTNTGSS------------------PSSSSK 125
            N +  PYTI PGQ ++      +T  T  T T SS                  P  SS 
Sbjct: 73  INQLNKPYTIFPGQVLKLSSTAKNTKPTKQTTTASSKPDPKSVTAKNDKKQSASPVVSSG 132

Query: 126 TTIITRPAGTAKPASAAKPAPAPLP----PAGPAPTG-------WGWPSNGVLIGKFSSN 174
            + +     T  P + A  A         P   A  G       W WP+ G LIG FS+ 
Sbjct: 133 QSSVVAQKKTLDPKNKADYAVTSSQQGDNPVATATDGLPNEVARWLWPAKGRLIGTFSAR 192

Query: 175 GSLNKGIDIAGDLGQPVLAASDGTVVYAGSGLRGYGELVIIKHSDTYVSAYGHNRRLLVR 234
              +KGI IAG  G PV AA++G VVY+G+ LRGYG LVIIKHS+ ++SAY H  ++LV 
Sbjct: 193 EQGSKGIKIAGRRGDPVRAAAEGRVVYSGNALRGYGNLVIIKHSEDFLSAYAHLDKILVT 252

Query: 235 EGQQVKVGQTIAEMGSTGTDRVKLHFEIRRQGKPVDPLQFLPRR 278
           E Q+V  GQT+A MG+T  + V LHFEIR  G  V+PL++LP++
Sbjct: 253 EKQRVSAGQTVATMGNTDAEHVMLHFEIRDHGVSVNPLKYLPKK 296