Pairwise Alignments

Query, 278 a.a., peptigoglycan-binding protein LysM from Pseudomonas simiae WCS417

Subject, 334 a.a., murein hydrolase activator NlpD from Rahnella sp. WP5

 Score =  198 bits (504), Expect = 1e-55
 Identities = 115/266 (43%), Positives = 156/266 (58%), Gaps = 34/266 (12%)

Query: 46  NAVPQKPTVTTGQYVVRKGDTMFSIAFRYGWDYKALAARNNIPVPYTIHPGQTIRFDGRT 105
           N++P K + +   Y V++GDT+F IA+  G D++ LAARNNIP PY++  GQTI+ +  +
Sbjct: 70  NSIP-KGSYSGSTYQVKRGDTLFYIAWITGNDFRDLAARNNIPEPYSLEVGQTIQINNVS 128

Query: 106 ------GSTPTTVVTNTG-----------SSPSSSSKTTIITRPAG-------------- 134
                 G+   T  TN G            S  +S  TT  +  +G              
Sbjct: 129 SAASTGGAIAVTDATNGGVPKVPTGGMLTGSVVASQPTTTYSDSSGKQNVGKMLPSSGAV 188

Query: 135 --TAKPASAAKPAPAPLPPAGPAPTGWGWPSNGVLIGKFSSNGSLNKGIDIAGDLGQPVL 192
             T  P + A    A     G   + W WP++G +I  FS++   NKGIDIAG  GQ V+
Sbjct: 189 TTTTTPVAVASTPVATSTNNGGPVSSWKWPTDGKIIDNFSASEGGNKGIDIAGSRGQSVV 248

Query: 193 AASDGTVVYAGSGLRGYGELVIIKHSDTYVSAYGHNRRLLVREGQQVKVGQTIAEMGSTG 252
           A + G VVYAG+ LRGYG L+IIKH+D Y+SAY HN  +LVRE Q+V+ GQ IA MGSTG
Sbjct: 249 ATASGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVQAGQKIATMGSTG 308

Query: 253 TDRVKLHFEIRRQGKPVDPLQFLPRR 278
           T  V+LHFEIR +GK V+PL++LP+R
Sbjct: 309 TSSVRLHFEIRYKGKSVNPLRYLPQR 334