Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1179 a.a., DNA polymerase III subunit alpha from Rhodanobacter denitrificans FW104-10B01

 Score = 1112 bits (2877), Expect = 0.0
 Identities = 610/1202 (50%), Positives = 799/1202 (66%), Gaps = 82/1202 (6%)

Query: 1    MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAG 60
            M   + HL LH+EYSLVD  +RIK LV   V   +PA+A+TD +NM +LVKFYK    AG
Sbjct: 1    MTVRYTHLHLHSEYSLVDSTIRIKALVAACVRDGIPALALTDDSNMFALVKFYKACSAAG 60

Query: 61   IKPICGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWV 120
            IKPI G DLW++  D   P  R++LL  +  GY NL+ L+SR + +GQ  G  ++E  W+
Sbjct: 61   IKPIGGCDLWMAAPDDPRPW-RLTLLCQHRAGYLNLSRLVSRAWQEGQHGGRALVEAGWL 119

Query: 121  -AEASEGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTNRPNDEE 179
             A+AS+GLI L   +E E+G   L    + A    +   ++FP+R YLE+ R  R  +E 
Sbjct: 120  TADASDGLIAL-LGRESEVGRLALNQGNEAALAKLRPLARLFPERLYLELTRCGREGEEA 178

Query: 180  HLHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYL 239
               AA+ALA +LG P++A+NDVRF+ + DF AHE RVCI +GR L DP+R ++YS++QYL
Sbjct: 179  WNTAALALAAELGLPVLASNDVRFLTQNDFGAHEARVCIQQGRVLADPKRPRDYSDQQYL 238

Query: 240  KSAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDG 299
            K+ EEMA LF+DLPEALEN+VE+AKRC +E+K G ++LP+FP+P G  +D + R+++  G
Sbjct: 239  KTPEEMAALFADLPEALENTVELAKRCTLELKFGTYYLPDFPVPAGHDLDSHIRELARQG 298

Query: 300  LEERLS--VLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNG 357
            L+ERL+   L    T  DY+A       RL  ELD+I++MGFPGYFLIV DFI W K NG
Sbjct: 299  LKERLANAPLAADHTLADYQA-------RLERELDVIVKMGFPGYFLIVADFINWGKQNG 351

Query: 358  VPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVI 417
            +PVGPGRGSGAGSLVA+  KITDLDPL+++LLFERFLNPERVSMPDFD+DFCMD RD VI
Sbjct: 352  IPVGPGRGSGAGSLVAWALKITDLDPLQFNLLFERFLNPERVSMPDFDIDFCMDRRDEVI 411

Query: 418  EYVAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFE--------- 468
            +YVA KYGR+ VSQIIT+GSMAAKAV+RD  RV G  Y   DR++K+IP           
Sbjct: 412  DYVARKYGRDRVSQIITYGSMAAKAVLRDSGRVLGFGYTQVDRIAKLIPARPLDLTLSCA 471

Query: 469  VGMTLEKAYEQEEILRDFIKI---DEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLT 525
            +G + +   E E ++++F ++   DEEA  + D+A KLE + RN GKHAGGVVIAP+ LT
Sbjct: 472  LGRSEKAKKEPERVVKEFCELYEQDEEARALIDLALKLENLTRNAGKHAGGVVIAPSPLT 531

Query: 526  DFSPIYCDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEP 585
            DF+P+YC+  GGG+VTQ+DKDDVEA GLVKFDFLGLRTLTIIDWA+K IN  RAK  E  
Sbjct: 532  DFAPLYCEAGGGGVVTQYDKDDVEAVGLVKFDFLGLRTLTIIDWAVKAINARRAKAGEAL 591

Query: 586  LDIAFIPLDDKPTYTLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPL 645
            LDI+ +PLDD  +Y LL+KA+T AVFQLES GM+ ++K  KPD  ED+IALVAL+RPGP+
Sbjct: 592  LDISALPLDDPASYELLKKAQTVAVFQLESSGMQRMLKDAKPDRFEDIIALVALYRPGPM 651

Query: 646  QSGMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705
               ++  F+ RKHGR ++ YP        ++P+L  TYGI++YQEQVMQ+AQ++ GY+LG
Sbjct: 652  D--LIPSFVARKHGREDVEYPDPR-----VEPILKETYGIMVYQEQVMQMAQIVGGYSLG 704

Query: 706  GADMLRRAMGKKKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAA 765
            GAD+LRRAMGKKK EEMAK+R  F EG A + +  + A +IFDL+EKFAGYGFNKSH+AA
Sbjct: 705  GADLLRRAMGKKKLEEMAKERAKFREGAAKDGLSGEKADSIFDLMEKFAGYGFNKSHAAA 764

Query: 766  YGLVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKF 825
            Y LVSYQTAWLKAHYPA FMAA +S+DM NTDKVVT ++E R + + +  PDVNASE+ F
Sbjct: 765  YALVSYQTAWLKAHYPAEFMAATISSDMDNTDKVVTFLDESRAIGIAVQPPDVNASEYMF 824

Query: 826  TVNDEGRIIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIR 885
               +   I YGLGAIKGVG+G  EAI   R +G + DL DFC RVD  R+N+R L+ LI 
Sbjct: 825  VAVEPKVIQYGLGAIKGVGQGACEAIVAERANGRYADLADFCRRVDPTRLNRRVLEALIL 884

Query: 886  SGALDRLGPYFHDEPKAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFV 945
            SGALD L                 NRA L+  + +AIKAAEQ  R   SG  D+FG    
Sbjct: 885  SGALDALA---------------ANRASLMLQLPDAIKAAEQHLRDRQSGQNDMFGAAMG 929

Query: 946  EEDADVYGNHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFA-------RQRI 998
                 +        E  L+++L+GE+DTLG YL+GHP D ++ E+ + +         R 
Sbjct: 930  NATPVLKIELPTVPEWPLEQKLQGERDTLGHYLSGHPTDPWKDELAQLSSCPLGEIADRY 989

Query: 999  IDLKPARDTQ--------------TVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASL 1044
               KP ++                TVAGM+ A+R    K+GD   F+ L+D SG IE S 
Sbjct: 990  QPPKPRKNDHDDGNRFRRGPDTPWTVAGMVTAVR----KRGDSDAFVRLEDGSGIIEVSF 1045

Query: 1045 FADAFHSAQSLLQTDAMVVVEGEVSNDDFS-GGLRLRIKRVMSMEDARTNLAESLRLKVK 1103
            F + +     LL  D M+VV+G +  DDFS GG +LR +   S+ DA    A  L+LK  
Sbjct: 1046 FGELYQQMAPLLTRDEMLVVDGGLRIDDFSGGGFQLRARSACSLADACRRHARLLQLK-- 1103

Query: 1104 TEALKGDQLRWLGEL---LKRHRGA-CPVTME-YTGSDAKAMLQFGETWRIDPADGLIQA 1158
               L G    ++G+L   L  +RG    VT+  Y    A+A L+ GE WR++    L++ 
Sbjct: 1104 ---LNGIGPGFVGQLQQALAGYRGGRTSVTLHGYRNRHAQADLELGEAWRVEAIPELLRT 1160

Query: 1159 LR 1160
            +R
Sbjct: 1161 VR 1162