Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1025 a.a., DNA polymerase III alpha subunit (EC 2.7.7.7) from Pseudomonas fluorescens FW300-N2E2

 Score =  382 bits (981), Expect = e-110
 Identities = 312/1075 (29%), Positives = 506/1075 (47%), Gaps = 93/1075 (8%)

Query: 1    MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAG 60
            M   +  L   + +S   G      L +        A+A+TD+  +  +V+ ++ A    
Sbjct: 1    MSVEYAELHCLSNFSFQRGASSALELCRRAKQQGYQALAITDECTLAGIVRAWQAAKELE 60

Query: 61   IKPICGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWV 120
            ++ I G+++ + N        ++ LL  +  GY+ L  LI+R     ++ G   I RE  
Sbjct: 61   LQLIVGSEIQVENGP------KLVLLVEDLEGYQALCRLITRARRRSEK-GHYRIVREDF 113

Query: 121  AEASEGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTNRPNDEEH 180
             +   GL+ L  A EG+           +AE   +     F  R +L VQ     +D   
Sbjct: 114  DQPLSGLLALWIA-EGK-----------DAEEHGRWLQPTFAGRLWLTVQLHCAQDDRRR 161

Query: 181  LHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYLK 240
            L  ++ALA++L  P+VA+ DV    +      +T   I     + +  +  + + E++L+
Sbjct: 162  LADSLALAERLDLPIVASGDVHMHVRGRRALQDTMTAIRHHVTVAEAGQRLHPNGERHLR 221

Query: 241  SAEEMAELFSDLPEAL-ENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDG 299
            S +++A+L+   P AL + ++ IA+RC  ++   ++  P   +P+G     + R+++  G
Sbjct: 222  SRKDLADLY---PRALLDETLNIARRCTFDLGQLRYQYPRELVPEGHDPASWLRELTERG 278

Query: 300  LEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVP 359
            + ER      KD   D   K +  +D+   EL +I ++G+  YFL V D + +A++  + 
Sbjct: 279  MRERW-----KDGVTD---KVRAQIDK---ELSLIAELGYDSYFLTVQDIVSFARSRHI- 326

Query: 360  VGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEY 419
            +  GRGS A S V Y   IT++DP    LLFERFL+ ER   PD DVDF  D R+ V++Y
Sbjct: 327  LCQGRGSAANSAVCYALGITEIDPSLTSLLFERFLSRERNEPPDIDVDFEHDRREEVLQY 386

Query: 420  VAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQ 479
            V ++YGR+  +      S      +RDVA    K+ GL       +    G   ++A   
Sbjct: 387  VFQRYGRHRAALTAVVSSYHGAGAVRDVA----KALGLPPDQVNALADCCGRWSDEAPPV 442

Query: 480  EEILRDFIKIDEEA-AEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGGG 538
            E +       D      +  + R+L G  R++ +H GG VI+   L    P+        
Sbjct: 443  ERLREGGFDPDSPVLRRVLSLTRQLIGFPRHLSQHPGGFVISEQPLDTLVPVENAAMAER 502

Query: 539  LVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDKPT 598
             + Q+DKDD++A GL+K D L L  L+ I      I R R     +   +A +P DD+ T
Sbjct: 503  TIIQWDKDDLDAVGLLKVDILALGMLSAIRRCFDLIERYRG----QRYALASLPQDDRAT 558

Query: 599  YTLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKH 658
            Y ++ +A+T  VFQ+ESR    ++ +L+P    DL+  VA+ RPGP+Q GMV  ++ R++
Sbjct: 559  YEMISRADTIGVFQIESRAQMSMLPRLRPKTFYDLVIEVAIVRPGPIQGGMVHPYLRRRN 618

Query: 659  GRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK-K 717
                + YP      E LK VL  T G+ L+QEQVMQIA V A YT G AD LRR+M   K
Sbjct: 619  KEEAVTYPS-----EALKQVLNRTLGVPLFQEQVMQIAIVAADYTPGEADQLRRSMAAWK 673

Query: 718  KPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLK 777
            +   +   R    +G   N   A+ A  IF+ ++ F  YGF +SH+A++ L++Y ++WLK
Sbjct: 674  RHGGLEPHRERLAQGMKKNGYTAEFAAQIFEQIKGFGNYGFPESHAASFALLTYASSWLK 733

Query: 778  AHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVND-EGR---I 833
             H PA F  A++++          ++++ R  +L +   DV AS++  ++   +GR   I
Sbjct: 734  CHEPAAFACALINSWPMGFYSPDQILQDARRHQLSIRPVDVRASDWDCSLEPMDGRQPAI 793

Query: 834  IYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLG 893
              GL  IKG  E     I  AR+  PF D+ D   R  L   + R    L  +GAL  L 
Sbjct: 794  RMGLCMIKGFREEDARRIEAARRHRPFSDVADLGERAQL---DARAQAQLADAGALQGLA 850

Query: 894  PYFHDEPKAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDADVYG 953
                          DR+R     A  E     +Q           LF GL  +E+  V  
Sbjct: 851  G-------------DRHR-----ARWEVAGVQKQLG---------LFAGLPCQEEPPV-- 881

Query: 954  NHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQTVAGM 1013
                  + TL E L  +  TLG  L  HP+     E+R    +   +L+     + V+  
Sbjct: 882  ---ALPKPTLGENLFADYTTLGTTLGPHPLALLRPELRARRCRSSRELQEVEHGRNVS-- 936

Query: 1014 IIALRVMKNKKGDKMG--FITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEG 1066
            +  L   + + G   G  F+TL+D  G +   ++ D     +  L    ++ V+G
Sbjct: 937  VAGLVTGRQRPGTASGVTFVTLEDEFGNLNVVVWRDLAERQRKTLVGSQLLKVDG 991