Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1173 a.a., DNA-directed DNA polymerase III (polc) from Pseudomonas stutzeri RCH2

 Score = 1972 bits (5110), Expect = 0.0
 Identities = 972/1174 (82%), Positives = 1068/1174 (90%), Gaps = 2/1174 (0%)

Query: 1    MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAG 60
            MP SFVHLRLHTEYSLVDGLVR+KPL+K +    MPAVAVTD +NMCSLVKFYK A G+G
Sbjct: 1    MPVSFVHLRLHTEYSLVDGLVRVKPLIKAVAAGGMPAVAVTDMSNMCSLVKFYKTAQGSG 60

Query: 61   IKPICGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWV 120
            IKPICGAD+W++  D D PLSR++LLAMN  GYRNLTELISRG+ +GQRN  +IIER+WV
Sbjct: 61   IKPICGADIWMAGCDEDGPLSRLTLLAMNPKGYRNLTELISRGWTEGQRNDLVIIERDWV 120

Query: 121  AEASEGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTNRPNDEEH 180
              A+EGLI LS AKEGE+G ALL G+   AE    EW  VF DRFYLE+QRT+R NDEEH
Sbjct: 121  KLAAEGLIALSGAKEGEVGQALLNGDEALAEARLAEWRDVFADRFYLEIQRTSRVNDEEH 180

Query: 181  LHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYLK 240
            LHAA ALAD+ G PLVATNDVRF+K+EDFEAHETRVCIGEGR LDDPRR + YS++QYLK
Sbjct: 181  LHAAAALADRTGTPLVATNDVRFLKQEDFEAHETRVCIGEGRTLDDPRRPRTYSDQQYLK 240

Query: 241  SAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGL 300
            +  EMAELFSDLPEALEN+VEIAKRCNIEV+LG +FLPNFP+P+GMTID+Y R+VSF+GL
Sbjct: 241  TPAEMAELFSDLPEALENTVEIAKRCNIEVQLGTYFLPNFPVPEGMTIDDYLRQVSFEGL 300

Query: 301  EERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPV 360
            EERL VLLPKDT  DYEAK+QVY+DRL FEL  IIQMGFPGYFLIVMDFI+WAKNNGVPV
Sbjct: 301  EERLEVLLPKDTP-DYEAKKQVYIDRLEFELGTIIQMGFPGYFLIVMDFIKWAKNNGVPV 359

Query: 361  GPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYV 420
            GPGRGSGAGSLVAYV KITDLDPL YDLLFERFLNPERVSMPDFDVDFCMDGRDRVI+YV
Sbjct: 360  GPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDYV 419

Query: 421  AEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE 480
            AE YGRNAVSQIITFG+MAAKAV+RDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYE E
Sbjct: 420  AEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEME 479

Query: 481  EILRDFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGGGLV 540
            E LRDF+ +DE+A EIW+MA KLEG+ R  GKHAGGVVIAPTKLTDF+PI CDEEGGGLV
Sbjct: 480  EPLRDFLAVDEDAREIWEMALKLEGITRGTGKHAGGVVIAPTKLTDFAPIACDEEGGGLV 539

Query: 541  TQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDKPTYT 600
            TQFDKDDVE+AGLVKFDFLGLRTLTII WAL+TINR++AK   EP++I FIPLDDKPTY 
Sbjct: 540  TQFDKDDVESAGLVKFDFLGLRTLTIIKWALETINREQAKKGLEPINIDFIPLDDKPTYQ 599

Query: 601  LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR 660
            LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
Sbjct: 600  LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR 659

Query: 661  AELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE 720
            AE++YPH DYQY GL+PVL PTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
Sbjct: 660  AEVSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE 719

Query: 721  EMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHY 780
            EMAKQRGGFIEGC+ N ID +L+GNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHY
Sbjct: 720  EMAKQRGGFIEGCSNNGIDKELSGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHY 779

Query: 781  PAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVNDEGRIIYGLGAI 840
            P+PFMAAVLSADMHNTDKVV LIEE R+MKLR+D PDVN SEFKFTVND+GRI+YGLGA+
Sbjct: 780  PSPFMAAVLSADMHNTDKVVILIEECRSMKLRIDPPDVNVSEFKFTVNDDGRIVYGLGAV 839

Query: 841  KGVGEGPVEAITEAR-QDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGPYFHDE 899
            KGVGEGPVEAI E R + GPFKDLFDFCAR+DLKRINKRTL+ LIRSGALDRLGPYF +E
Sbjct: 840  KGVGEGPVEAIAECRAEGGPFKDLFDFCARIDLKRINKRTLEALIRSGALDRLGPYFFEE 899

Query: 900  PKAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDADVYGNHRKAK 959
             KAYQANIDRNRAVLL AMEEA++AAEQTAR+ +SGH DLFGGLF E +ADVY NHR A+
Sbjct: 900  AKAYQANIDRNRAVLLAAMEEAVQAAEQTARSAESGHMDLFGGLFAEPEADVYANHRNAR 959

Query: 960  ELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQTVAGMIIALRV 1019
            EL+LKERLKGEKDTLGLYLTGHPIDEYEGE+RRFARQRIIDL+PAR  QT+AG+I+ LRV
Sbjct: 960  ELSLKERLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIIDLRPARGEQTIAGLIVNLRV 1019

Query: 1020 MKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEVSNDDFSGGLRL 1079
            MKNKKGDKMGFITLDDRSGRIEASLFA+AF+SAQ+LLQTDA+VVVEGEVSNDDFSGGLRL
Sbjct: 1020 MKNKKGDKMGFITLDDRSGRIEASLFAEAFNSAQALLQTDALVVVEGEVSNDDFSGGLRL 1079

Query: 1080 RIKRVMSMEDARTNLAESLRLKVKTEALKGDQLRWLGELLKRHRGACPVTMEYTGSDAKA 1139
            R KRVMS+E+ART LAESLR+KV  EAL+G+++RWL E+  RHRGACP+T+EYTG DA+A
Sbjct: 1080 RAKRVMSLEEARTGLAESLRVKVAGEALRGERMRWLAEVCGRHRGACPITLEYTGRDARA 1139

Query: 1140 MLQFGETWRIDPADGLIQALRDQFGRDNVFLQYR 1173
            +LQFGE WRIDPAD LIQALRDQFGRDNVFLQYR
Sbjct: 1140 LLQFGEEWRIDPADNLIQALRDQFGRDNVFLQYR 1173