Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1026 a.a., DNA-directed DNA polymerase III (polc) from Pseudomonas stutzeri RCH2

 Score =  365 bits (936), Expect = e-104
 Identities = 301/1090 (27%), Positives = 495/1090 (45%), Gaps = 114/1090 (10%)

Query: 1    MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAG 60
            M   +  L   + +S   G    + L +        A+A+TD+ ++  +V+ ++ +   G
Sbjct: 1    MNTEYAELHCLSNFSFQRGASSARELFERAKRQGYDALAITDECSLAGIVRAWQASKDTG 60

Query: 61   IKPICGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIE---R 117
            +  I G++L +          ++ LL  N  GY+ L +LI+R     ++     +    R
Sbjct: 61   LPLIIGSELQIEGGP------KLVLLVENLTGYQALCQLITRARRRAEKGRYQALREDLR 114

Query: 118  EWVAEASEGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTNRPND 177
            +W  E             G + I L   +  +AE   +  +  F +R +L ++    P+D
Sbjct: 115  DWPLE-------------GLLAIWLPDHDGADAE--GRWLLDRFRERLWLGIELHRGPDD 159

Query: 178  EEHLHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQ 237
               L  ++  A +LG   VA  DV    +      +    I     + +  R    + E+
Sbjct: 160  ALQLRQSLTQASRLGISAVACGDVHMHARGRRALQDCMTAIRHHLPVAEAGRHLFPNGER 219

Query: 238  YLKSAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSF 297
            +L+S EE+A+L+    E L  ++ I++RC+ ++   K+  P+  +P G     + RK+  
Sbjct: 220  HLRSREELAQLYP--AELLAETLRISQRCHFQLDQLKYHYPHELVPPGHDTTSWLRKLVE 277

Query: 298  DGLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNG 357
            DG   R    +P+      +A+ Q     L  EL++I  + +  YFL V D +++A+  G
Sbjct: 278  DGARWRWPDGIPE------KARAQ-----LEHELELIADLHYESYFLTVHDIVRFAREQG 326

Query: 358  VPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVI 417
            + +  GRGS A S V +V  IT+LDP+   LLFERFL+ ER   PD DVDF  D R+ VI
Sbjct: 327  I-LCQGRGSAANSSVCFVLGITELDPVRSKLLFERFLSRERNEPPDIDVDFEHDRREEVI 385

Query: 418  EYVAEKYGRNAVSQIITFGSMAAKAVIRDVARVQG-------KSYGLADRLSKMIPFEVG 470
            +YV ++YGRN  +      S  A   +RDVA+  G          G   R S+ IP +  
Sbjct: 386  QYVFQRYGRNRAALTAVASSYRATGALRDVAKALGLPPDQINALAGCCGRWSEHIPDDSQ 445

Query: 471  MTLEKAYEQEEILRDFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPI 530
            +          +LR  + + +           L G  R++ +H GG VI+   L    PI
Sbjct: 446  LREAGFDPDNPVLRRVLVLTD----------ALIGFPRHLSQHPGGFVISEQPLDTLVPI 495

Query: 531  YCDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAF 590
                     V Q+DKDD++A GL+K D L L  L+ I      I   R         IA 
Sbjct: 496  ENASMADRTVIQWDKDDLDAVGLLKVDVLALGMLSAIRRCFDLIEHYRG----TRWTIAT 551

Query: 591  IPLDDKPTYTLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMV 650
            +P +DKPTY ++ +A+T  VFQ+ESR    ++ +L+P    DL+  VA+ RPGP+Q  MV
Sbjct: 552  LPAEDKPTYEMISRADTIGVFQIESRAQMAMLPRLRPKTFYDLVIQVAIVRPGPIQGDMV 611

Query: 651  DDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADML 710
              ++ R++   ++ YP      E LKPV   T G+ L+QEQVM++A V A YT   AD L
Sbjct: 612  HPYLRRRNKEEDVDYPS-----EELKPVFERTLGVPLFQEQVMELAIVAAEYTPDEADKL 666

Query: 711  RRAMGK-KKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLV 769
            RRAM   K+   +   R    E         D    IF+ ++ F  YGF +SH+A++ L+
Sbjct: 667  RRAMAAWKRHGSLEPHRVRLTERMLAKGYQPDFIARIFEQIKGFGSYGFPESHAASFALL 726

Query: 770  SYQTAWLKAHYPAPFMAAVLSA---DMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFT 826
            +Y + WLK H PA F  A++++     +N D++   +++ R   L +   DV  S +  +
Sbjct: 727  TYASCWLKRHEPAAFACALINSWPMGFYNPDQI---LQDARRHGLEIRPVDVRHSGWDCS 783

Query: 827  V----NDEGRIIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDG 882
            +     ++  I  GL  ++   E     I  ARQ  PF ++ D C R +L+    R  + 
Sbjct: 784  LEPCSQEQPAIRLGLRMVRSFREADARRIEAARQRQPFTNIHDLCLRAELE---PRAREQ 840

Query: 883  LIRSGALDRLGPYFHDEPKAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGG 942
            L  +G L  L  +             R+RA    A  E                  LF  
Sbjct: 841  LADAGVLRGLAGH-------------RHRARWAVAGVEP--------------QLPLFAS 873

Query: 943  LFVEEDADVYGNHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEI--RRFARQRIID 1000
            L   E+  +          ++ E L  +  TLG  L  HP+     E+  RR    R + 
Sbjct: 874  LPATEETPI-----NLPLPSVSEDLLNDYATLGTTLGPHPLALLRDELKARRCRSSRELA 928

Query: 1001 LKPARDTQTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDA 1060
            +       ++AG++I  +  +   G  + F+TL+D  G +   ++ D     +  L    
Sbjct: 929  MIEHGRPVSIAGLVIGRQRPQTASG--VIFVTLEDEFGMVNVVVWRDLAERQRRPLIQSQ 986

Query: 1061 MVVVEGEVSN 1070
            ++ V+G + +
Sbjct: 987  LLRVDGHLES 996