Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1196 a.a., DNA polymerase III alpha subunit (EC 2.7.7.7) from Xanthomonas campestris pv. campestris strain 8004

 Score = 1011 bits (2613), Expect = 0.0
 Identities = 562/1182 (47%), Positives = 756/1182 (63%), Gaps = 97/1182 (8%)

Query: 5    FVHLRLHTEYSLVDGLVRI--KP------------LVKTLVGMNMPAVAVTDQNNMCSLV 50
            FVHL +HTE+SL D  +R+  KP            L+   V +++PA+AVTD NN+ +LV
Sbjct: 6    FVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDLPALAVTDLNNLFALV 65

Query: 51   KFYKNAMGAGIKPICGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQR- 109
            KFYK A G GIKPI GAD+ ++   PD    R++LL  +  GY +L+ L++R +++G R 
Sbjct: 66   KFYKAAEGVGIKPIAGADVMIAT--PDVTPWRMTLLCRDREGYLSLSRLLTRAWMEGHRP 123

Query: 110  NGSIIIEREWVAEASEGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEV 169
             G + I  EW+      L  L A ++   G     G    AE    +W +VF D  +LE+
Sbjct: 124  EGGVAIHPEWLQAGHANLFAL-AGRDSLAGRLFAEGRADLAEQQLADWQRVFGDGLHLEL 182

Query: 170  QRTNRPNDEEHLHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRR 229
             RT R  +E     A+  A   G P+VA+NDVRF+   DF AHE RVCI  GR LDDP+R
Sbjct: 183  TRTGREGEERFNQFALHAAGVRGLPVVASNDVRFLYASDFAAHEARVCISSGRVLDDPKR 242

Query: 230  SKNYSEEQYLKSAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTID 289
             ++YS++QYLKS+EEMA LF+D+P+A++N++ +A+RCNIE++LG +FLP +P+P+  T+D
Sbjct: 243  PRDYSDQQYLKSSEEMAALFADVPDAIDNTLALAQRCNIEMRLGTYFLPAYPVPEDETLD 302

Query: 290  EYFRKVSFDGLEERL--SVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVM 347
             + R  S DGL  RL  + + P  T +DY       VDRL FELD II+MGFPGYFLIV 
Sbjct: 303  SWIRSQSRDGLAARLEKNPIAPGKTRQDY-------VDRLEFELDTIIKMGFPGYFLIVA 355

Query: 348  DFIQWAKNNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVD 407
            DFIQW KN G+P+GPGRGSGAGSLVA+  +ITDLDPL Y+LLFERFLNPERVSMPDFD+D
Sbjct: 356  DFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPERVSMPDFDID 415

Query: 408  FCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPF 467
            FCMD RD VI+YVA KYGR  VSQIIT+G+MAAKAV+RD  RV G +YGL D ++K+IP 
Sbjct: 416  FCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTYGLVDSVAKLIPN 475

Query: 468  EVGMTLEKAYEQ--------EEILRDFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVI 519
             +G+TL+ A  +         E+++ + +++++  ++ D+AR+LE + RN GKHAGGVVI
Sbjct: 476  ILGITLKDAMGEGKDTEMASPELIQRY-QVEDDVRDLMDLARQLEDLTRNAGKHAGGVVI 534

Query: 520  APTKLTDFSPIYCDEEGGGL----VTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTIN 575
            AP  L++F P++ + + GG     VTQFDK+DVE  GLVKFDFLGLRTLTIIDWA+K IN
Sbjct: 535  APEPLSEFCPLFAEHDEGGRGKNPVTQFDKNDVEEVGLVKFDFLGLRTLTIIDWAVKAIN 594

Query: 576  RDRAKVNEEPLDIAFIPLDDKPTYT-LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLI 634
               A+   +P+DI  IPLDD PTY  +     T AVFQ ES GM+ L+K  +PD  EDLI
Sbjct: 595  VRHARAGIDPVDITAIPLDDAPTYKGVFASGNTGAVFQFESSGMRRLLKDARPDRFEDLI 654

Query: 635  ALVALFRPGPLQSGMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQ 694
            ALV+L+RPGP+   ++ DF  RKHG+ ++ YP  D + E    +L  TYGI++YQEQVMQ
Sbjct: 655  ALVSLYRPGPMD--LIPDFNARKHGQQDIIYP--DPRTEA---ILKDTYGIMVYQEQVMQ 707

Query: 695  IAQVMAGYTLGGADMLRRAMGKKKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFA 754
            +AQ++  Y+LGGAD+LRRAMGKK P EMAK R  F EG A   + A  A  IFDL+EKFA
Sbjct: 708  MAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAQKADEIFDLMEKFA 767

Query: 755  GYGFNKSHSAAYGLVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLD 814
            GYGFNKSH+AAY LVSYQTAWLK HYPA FMAA LS+DM NTDKVV  ++EVR + L + 
Sbjct: 768  GYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLGLTVL 827

Query: 815  APDVNASEFKFTVNDEGRIIYGLGAIKGVGEGPVEAITEAR-QDGPFKDLFDFCARVDLK 873
             P VN S + F       I YGLGAIKGVG+G  EAI E R ++GP+  L DFC RV   
Sbjct: 828  PPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERLRNGPYTTLLDFCTRVGTA 887

Query: 874  RINKRTLDGLIRSGALDRLGPYFHDEPKAYQANIDRNRAVLLTAMEEAIKAAEQTARTHD 933
            ++N+RTL+ +I +GA+D LG               +NRA L+  + E +KA EQ AR   
Sbjct: 888  KLNRRTLEAMINAGAMDGLG---------------KNRASLMLQLPEVMKATEQMARERA 932

Query: 934  SGHADLFGGLFVEEDADVYGNHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRF 993
            SG   LFGG      A +  +  ++KE  L + L GE++TLG YL+GHP D +  E+R  
Sbjct: 933  SGQNSLFGGPDPSAPA-MRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHRDEVREL 991

Query: 994  ARQRIIDLKPARDTQ---------------------TVAGMIIALRVMKNKKGDKMGFIT 1032
                +  L     +Q                      +AG ++ +R    +KGD   F+ 
Sbjct: 992  VGCDLSALDKILASQQRGGGGGGDGEKRAWRPEVSAILAGQVVGVR----RKGDSQVFVQ 1047

Query: 1033 LDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEVSNDDFSGGLRLRIKRVMSMEDART 1092
            L+D  GR+E S F+DA      LL  D +++++G +  D+F+GG  LRI++    E    
Sbjct: 1048 LEDGRGRVECSAFSDAMAEFGHLLTRDRILIIKGGLREDEFNGGYSLRIRQCWDYEQICA 1107

Query: 1093 NLAESLRLKVKTEALKGDQLRW--LGELLKRHR-GACPVTME 1131
            +  + L L++       ++  W  +  LL +HR G  P+ ++
Sbjct: 1108 DHTQRLSLRLDLR----EKQAWSRIDTLLAKHRPGKTPLRLD 1145