Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

 Score = 1308 bits (3386), Expect = 0.0
 Identities = 667/1172 (56%), Positives = 851/1172 (72%), Gaps = 23/1172 (1%)

Query: 5    FVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIKPI 64
            F+HLR+H+++S+VDGL ++ PLVK +  M MPA+A+TD  N+C LVKFY  A   G+KPI
Sbjct: 6    FIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPI 65

Query: 65   CGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWVAEAS 124
             GAD  L +++  + L++++LLA N VGY+NLT LIS+ ++ G      +I++ W+ E +
Sbjct: 66   IGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVEHA 125

Query: 125  EGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTNRPNDEEHLHAA 184
            EGLI+LS  K GE+G ALL GN Q+ E   + +   F D FYLE+ RT R ++E +LH A
Sbjct: 126  EGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFA 185

Query: 185  VALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYLKSAEE 244
            + +A++   P+VATN+V FI +E FEAHE RV I +G  L+DPRR KNYS +QYL+S  E
Sbjct: 186  LDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAE 245

Query: 245  MAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGLEERL 304
            M ELF+D+PEAL NSVEIAKRCN+ V+LG++FLPNFP   GM I+++    S +GLEERL
Sbjct: 246  MCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPT-GGMAIEDFLVMKSREGLEERL 304

Query: 305  SVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPVGPGR 364
              L P    E    +R  Y +RL  ELD+I QMGFPGYFLIVM+FIQW+K+N +PVGPGR
Sbjct: 305  EFLFPDP--EVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGR 362

Query: 365  GSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYVAEKY 424
            GSGAGSLVAY  KITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMD RD+VI++VAE Y
Sbjct: 363  GSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMY 422

Query: 425  GRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQEEILR 484
            GR+AVSQIITFG+MAAKAVIRDV RV G  +G  DR+SK++P + GMTLEKA+  E  L+
Sbjct: 423  GRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFIAEPALQ 482

Query: 485  DFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGGGLVTQFD 544
            +    DEE  E+ D  R LEG  RN GKHAGGVVI+PT +TDF+PIYCD EG   VTQFD
Sbjct: 483  ELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPVTQFD 542

Query: 545  KDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDKPTYTLLQK 604
            K+DVE AGLVKFDFLGLRTLTIIDWAL  +N    K  + P+ I  IPLDD  ++  LQ 
Sbjct: 543  KNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFRNLQD 602

Query: 605  AETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRAELA 664
            A+TTAVFQLESRGMKELIK+L+PDC ED+IALVALFRPGPLQSGMVD+FI+RKHGR  ++
Sbjct: 603  AKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREAIS 662

Query: 665  YPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPEEMAK 724
            YP   +Q+E LK +L PTYGIILYQEQVMQIAQV++GYTLGGADMLRRAMGKKKPEEMAK
Sbjct: 663  YPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAK 722

Query: 725  QRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHYPAPF 784
            QR  F EG   N +D +LA  IFDLVEKFAGYGFNKSHSAAY LVSYQT WLK HYPA F
Sbjct: 723  QRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPAEF 782

Query: 785  MAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVNDEGRIIYGLGAIKGVG 844
            MAAV++ADM NT+KVV L++E + M L +  PD+N+  ++F V+D G I+YG+GAIKGVG
Sbjct: 783  MAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNGAIVYGIGAIKGVG 842

Query: 845  EGPVEAITEAR-QDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGPYFHDEPKAY 903
            EGP+EAI EAR + G FKDLFDFCAR+DLK++NKR ++ LI +GALDRLGP+        
Sbjct: 843  EGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPH-------- 894

Query: 904  QANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDADVYGNHRKAKELTL 963
                   RA ++ ++++A++AA Q  +    G AD+F G+  +   +V   + +  E   
Sbjct: 895  -------RAAMMASVDDAVRAASQHHQAEAFGQADMF-GVLTDAPEEVEQKYTQVPEWPE 946

Query: 964  KERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQ--TVAGMIIALRVMK 1021
            K RL+GE++TLGLYLTGHP+DEY  E+ ++   R+ +  P R  Q  TVAG++IA RVM 
Sbjct: 947  KVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMT 1006

Query: 1022 NKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEVSNDDFSGGLRLRI 1081
             K+G ++G +TLDDRSGR+E  L+++A       L+ D ++VV G+VS DDF+GGL++  
Sbjct: 1007 TKRGTRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSA 1066

Query: 1082 KRVMSMEDARTNLAESLRLKVKTEALKGDQLRWLGELLKRHR-GACPVTMEYTGSDAKAM 1140
            + VM +  AR   A  L + +    +          +L+ HR G  PV + Y   DA+A 
Sbjct: 1067 REVMDLGSAREKFARGLSISILQSQIDQQFFERFSHILEPHRAGTVPVNVYYQRPDARAR 1126

Query: 1141 LQFGETWRIDPADGLIQALRDQFGRDNVFLQY 1172
            L  G  WR+ P+D L+  L+   G D V L++
Sbjct: 1127 LTLGTEWRVTPSDTLLDELKQLLGHDQVELEF 1158