Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1031 a.a., DNA polymerase III, alpha subunit from Pseudomonas syringae pv. syringae B728a

 Score =  354 bits (909), Expect = e-101
 Identities = 308/1113 (27%), Positives = 506/1113 (45%), Gaps = 109/1113 (9%)

Query: 1    MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAG 60
            M   +  L   + +S   G    + L +  +     A+A+TD+  +  +V+ ++ +   G
Sbjct: 1    MTREYAELHCLSNFSFQRGASSARELFERALRHGYKALAITDECTLAGIVRAWQASKSTG 60

Query: 61   IKPICGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQR--NGSIIIERE 118
            +  I G+++ + N        ++ LL  N  GY  L +LI+   +  +R   G   + RE
Sbjct: 61   LPLIVGSEMHIENGP------KVVLLVENQAGYEALCKLIT---VARRRAGKGEYRVLRE 111

Query: 119  WVAEASEGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTNRPNDE 178
                A +GL+ L         +  L GN Q      +   + F +R +L V     P+DE
Sbjct: 112  DFEPAPDGLLAL--------WLPDLDGNAQACLAGGRWLRERFAERLWLGVGLHRGPDDE 163

Query: 179  EHLHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQY 238
            + L   +ALA  LG P VA+ DV    +      +T   I     + +       + E++
Sbjct: 164  QRLADLLALAQSLGVPAVASGDVHMHARGRRALQDTMTAIRHHTTVAEAGHLLFANGERH 223

Query: 239  LKSAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFD 298
            L+  + ++E + D    L  SV IA+RC  ++   K+  P+  +P G T   + R+++  
Sbjct: 224  LRPLDALSEHYPDW--LLAESVRIARRCTFDLGDLKYEYPHELVPKGQTSTSWLRELTER 281

Query: 299  GLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGV 358
            G+  R    L   T    E            EL +I +  F  YFL V D +++A++  +
Sbjct: 282  GVRRRWPGGLTPATRAQVEK-----------ELALIAEKKFDSYFLTVHDIVEFARSQHI 330

Query: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIE 418
             +  GRGS A S V Y   IT+L+P + +LLFERF++ ER   PD DVDF  D R+ VI+
Sbjct: 331  -LCQGRGSAANSAVCYALGITELNPEQSNLLFERFISRERNEPPDIDVDFEHDRREEVIQ 389

Query: 419  YVAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYE 478
            Y+  +YGR   +      +      +RDVA+V G      + L+     E       +  
Sbjct: 390  YIFRRYGRGRAALTAVASTYHGSGAMRDVAKVLGLPPEQINALA-----EAFSRWSDSLP 444

Query: 479  QEEILRDFIKIDEEA---AEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEE 535
              E LR++   D +      +  +  +L G  R++ +H GG VI+   L    P+     
Sbjct: 445  SPERLREY-GFDADTPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLETLVPVENAAM 503

Query: 536  GGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDD 595
                + Q+DKDD++  GL+K D L L  L+ +      ++  R     +   +A +P DD
Sbjct: 504  ADRTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRG----QRWTLATLPGDD 559

Query: 596  KPTYTLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFIN 655
            + TY ++ +A+T  VFQ+ESR    ++ +L+P+   DL+  VA+ RPGP+Q  MV  ++ 
Sbjct: 560  RKTYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVHPYLR 619

Query: 656  RKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMG 715
            R++G  ++ YP        L+ V   T G+ L+QEQVM++A + A YT G AD LRRAM 
Sbjct: 620  RRNGEEDVTYPPK------LESVFKRTLGVPLFQEQVMEVAILAADYTPGEADELRRAMA 673

Query: 716  K-KKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTA 774
              K+   +   R     G   N  +AD A  IF+ ++ F  YGF +SH+A++ L++Y + 
Sbjct: 674  AWKRHGGLEPHRERLRTGMLKNGYEADFADRIFEQIKGFGSYGFPESHAASFALLTYASC 733

Query: 775  WLKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVN-----D 829
            WLK H PA F  A++++          L+++ R   + +   DV  S++  ++      D
Sbjct: 734  WLKCHEPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSDWDCSLEPLDHPD 793

Query: 830  EGR---IIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRS 886
              R   I  GL  ++   E     I  AR   PF D  D   R +L   + R  + L  S
Sbjct: 794  RTRNLAIRLGLRMVRSFREEDALRIEVARAKRPFVDATDLTLRAEL---DARAAEALADS 850

Query: 887  GALDRLGPYFHDEPKAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVE 946
            GAL  L  +             R+RA    A  EA                 LF  L  E
Sbjct: 851  GALRGLIGH-------------RHRARWEVAGVEA--------------QRPLFDDLPSE 883

Query: 947  EDADVYGNHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEI--RRF-ARQRIIDLKP 1003
            E              T+ E L  +  TLG  L  HP+     ++  +RF + Q ++ L+ 
Sbjct: 884  E------TQVTLPLPTVAEDLVADYTTLGTTLGPHPLALLRRQLAAKRFRSSQDLLHLEN 937

Query: 1004 ARDTQTVAGMIIALRVMKNKKGDKMG--FITLDDRSGRIEASLFADAFHSAQSLLQTDAM 1061
             R T +VAG++I     + + G   G  F+TL+D  G +   ++ D     + +L    +
Sbjct: 938  DR-TLSVAGLVIG----RQRPGTASGVTFVTLEDEFGMVNVVVWRDLAERQRKVLVGSQL 992

Query: 1062 VVVEGEVSNDDFSGGLRLRIKRVMSMEDARTNL 1094
            + V G + +   SG   L  +R+  +    T L
Sbjct: 993  LQVFGRLESK--SGVRHLIAQRLYDLTPLLTGL 1023