Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 897 a.a., trans-splicing intein-formed DNA polymerase III subunit alpha N-terminal partner DnaE-N from Synechocystis sp000284455 PCC 6803

 Score =  556 bits (1433), Expect = e-162
 Identities = 325/791 (41%), Positives = 480/791 (60%), Gaps = 56/791 (7%)

Query: 4   SFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIKP 63
           SFV L +H++YSL+DG  ++  L+   + + MPA+A+TD   M   V+  K   G  IKP
Sbjct: 2   SFVGLHIHSDYSLLDGASQLPALIDRAIELGMPAIALTDHGVMYGAVELLKVCRGKPIKP 61

Query: 64  ICGADLWLSNKDPD-NPLSRIS---LLAMNGVGYRNLTELISRGFIDGQRNGSII----I 115
           I G ++++ N D + N   R     +LA N  GYRNL +L +   + G +   I     I
Sbjct: 62  IIGNEMYVINGDIEINKRHRRFHQVVLAKNNQGYRNLVKLTTISNLKGIQGSGIFARPCI 121

Query: 116 EREWVAEASEGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTNRP 175
            +E + +  EGLI+ SA   GE+  A+L G+   A  +AK +  +F D +YLE+Q     
Sbjct: 122 NKELLEQYKEGLIVTSACLGGEVPQAILKGDLDHARQVAKWYKNLFGDDYYLEIQDHGSV 181

Query: 176 NDEEHLHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSE 235
            D       V +A +L   +VATND  FI   D EAH+  +CI  G+ + + +R + YS 
Sbjct: 182 EDRLVNINLVKIAQELDIKIVATNDSHFISCNDVEAHDALLCIQTGKLITEEKRLR-YSG 240

Query: 236 EQYLKSAEEMAELFSD-LPE-----ALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTID 289
            +YLKSAEEM  LF D LP+     A+ N++E+A +      LG+  +P++PIP   T +
Sbjct: 241 TEYLKSAEEMHLLFRDHLPDDIIETAIANTLEVADKVEAYSILGEPRIPHYPIPPNHTPE 300

Query: 290 EYFRKVSFDGLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDF 349
            Y   +++DGL ERL      D T        VY +RL +EL ++ +MGF  YFL+V D+
Sbjct: 301 TYVEDIAWDGLLERLKCRERADITP-------VYKERLEYELRMLEKMGFCTYFLVVWDY 353

Query: 350 IQWAKNNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFC 409
           I++A+++G+PVGPGRGS AGSLVAY  KIT++DP+ + L+FERFLNPER SMPD D DFC
Sbjct: 354 IKYARDHGIPVGPGRGSAAGSLVAYCMKITNIDPVHHGLIFERFLNPERKSMPDVDTDFC 413

Query: 410 MDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEV 469
           +D RD +IEYV +KYG + V+QIITF  M +KAV++DVARV    Y  +D+++KMIP   
Sbjct: 414 IDRRDEMIEYVTQKYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYAESDKMAKMIPVSR 473

Query: 470 GMTLE-KAYEQEEILRDFIKI---DEEAAEIW-DMARKLEGVVRNVGKHAGGVVIAPTKL 524
           G   + K    ++      K    +E   + W DMA ++EG  +  G HA GVVI+   L
Sbjct: 474 GKPAKLKVMISDQTPEPQFKARYDNEPWVKKWIDMAIRIEGTNKTFGVHAAGVVISSEPL 533

Query: 525 TDFSPIYCDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEE 584
               P+  + + G ++TQ+  +DVEA GL+K DFLGL+ LT +  A++ +    A+    
Sbjct: 534 DQIVPLQKNND-GAVITQYYMEDVEAMGLLKMDFLGLKNLTTLQRAVELV----AETKGI 588

Query: 585 PLDIAFIPL-------------------DDKPTYTLLQKAETTAVFQLESRGMKELIKKL 625
            LD+  +PL                   D K T+ LL+  +   +FQLES+GMK++++ L
Sbjct: 589 ELDLDDLPLQERKALQIRARTGSKKLPDDVKKTHKLLEAGDLEGIFQLESQGMKQIVRDL 648

Query: 626 KPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGI 685
           KP  +ED+ +++AL+RPGPL +G++  FINRKHGR E++     YQ++ L+P+L  TYG+
Sbjct: 649 KPSGIEDISSILALYRPGPLDAGLIPIFINRKHGREEIS-----YQHKLLEPILNETYGV 703

Query: 686 ILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPEEMAKQRGGFIEGCATNNIDADLAGN 745
           ++YQEQ+M++AQ +A Y+LG AD+LRRAMGKKK EEM K R  F++G   + + + +A N
Sbjct: 704 LVYQEQIMKMAQDLADYSLGEADLLRRAMGKKKAEEMQKHRAKFVDGSTKHGVPSRIAEN 763

Query: 746 IFDLVEKFAGY 756
           +FD + KFA Y
Sbjct: 764 LFDQMVKFAEY 774