Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 870 a.a., DNA polymerase III subunit alpha from Synechococcus elongatus PCC 7942

 Score =  578 bits (1490), Expect = e-169
 Identities = 330/774 (42%), Positives = 476/774 (61%), Gaps = 39/774 (5%)

Query: 4   SFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAG-IK 62
           SFV L +H++YSL+DG  ++  LV     + MPA+A+TD   M   ++  K     G I+
Sbjct: 2   SFVGLHMHSDYSLLDGASQLPDLVARAKELGMPAIALTDHGVMYGAIELLKVCKNQGNIR 61

Query: 63  PICGADLWLSNKDPDNPLSRIS-----LLAMNGVGYRNLTELISRGFIDGQRNGSII--- 114
           PI G ++++ N   D+P  R+      +LA N  GY+NL +L S   + G +   I    
Sbjct: 62  PIIGNEMYVINSPIDDPNPRVRKYHQIVLAKNKKGYQNLVKLTSISHLQGFKGRGIFARP 121

Query: 115 -IEREWVAEASEGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTN 173
            I++E + +  EGLI+ SA   GEI  A+L   P  A  +A  + + F + FYLE+Q   
Sbjct: 122 CIDKEHLEKYREGLIVTSACLGGEIPQAILQSRPDVARRVAAWYQERFGEDFYLEIQDHG 181

Query: 174 RPNDEEHLHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNY 233
            P D       V +A +LG  LVATND  FI   D EAH+  +CI  G+ + + +R + Y
Sbjct: 182 SPEDRIVNVEIVRIAQELGIELVATNDSHFISCFDVEAHDALLCIQTGKLVVEDKRLR-Y 240

Query: 234 SEEQYLKSAEEMAELFSD------LPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMT 287
           S  +YLKSAEEM +LF D      + +A+ N++ IA +      LG+  +P FP+PDG  
Sbjct: 241 SGTEYLKSAEEMHQLFRDHLPDDVIAKAIANTLVIASKIEDYNILGEPKIPTFPVPDGYN 300

Query: 288 IDEYFRKVSFDGLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVM 347
            + Y  +V+  GL ERL+        + YE   + Y DRL +E+ ++ +MGF  YFL+V 
Sbjct: 301 EETYMAEVARQGLAERLNC-------DRYEDCEEAYRDRLEYEIKMMHEMGFASYFLVVW 353

Query: 348 DFIQWAKNNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVD 407
           D+I++A++N +PVGPGRGS AGSLVAY   IT++DP+ + LLFERFLNPER SMPD D D
Sbjct: 354 DYIKFARDNNIPVGPGRGSAAGSLVAYCMGITNIDPVHHGLLFERFLNPERKSMPDIDTD 413

Query: 408 FCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPF 467
           FC+D RD+VI+YV +KYG + V+QIITF  M +KAV++DVARV    YG ADR++K+IP 
Sbjct: 414 FCIDQRDKVIDYVTKKYGEDRVAQIITFNRMTSKAVLKDVARVLDIPYGEADRMAKLIPV 473

Query: 468 EVG--MTLEKAYEQEEILRDFIKIDEEAAEI--W-DMARKLEGVVRNVGKHAGGVVIAPT 522
             G    L+     +    +F +  E+ A +  W DMA ++EG  +  G HA GVVI+  
Sbjct: 474 ARGKPAKLKVMISDQTPAPEFKEKYEKDARVKHWVDMALRIEGTNKTFGVHAAGVVISAV 533

Query: 523 KLTDFSPIYCDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVN 582
            L +  P+  + + G ++TQ+  +D+EA GL+K DFLGLR LT+I  A+  +     + +
Sbjct: 534 PLDEIVPLQRNND-GQVITQYYMEDIEACGLLKMDFLGLRNLTMIQKAIDLVQ----ETS 588

Query: 583 EEPLDIAFIPLDDKPTYTLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642
            + +D   +P+DD  TY LL K +   VFQLES GM+++++ LKP  LED+ +++AL+RP
Sbjct: 589 GQAIDPDRLPMDDPKTYQLLAKGDLEGVFQLESSGMRQIVRDLKPSNLEDISSILALYRP 648

Query: 643 GPLQSGMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGY 702
           GPL +G++  FINRKHGR  +     DY  + L+P+L  TYGI++YQEQ+M+IAQ M GY
Sbjct: 649 GPLDAGLIPKFINRKHGREAI-----DYADQMLQPILNETYGIMVYQEQIMKIAQDMGGY 703

Query: 703 TLGGADMLRRAMGKKKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGY 756
           TLG AD+LRRAMGKKK  EM K +  F+EG   N +   +A  +FD +  FA Y
Sbjct: 704 TLGEADLLRRAMGKKKMSEMVKHQSTFVEGAKKNGVAEKVAAELFDQMVLFAEY 757