Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1116 a.a., DNA polymerase III subunit alpha from Sinorhizobium meliloti 1021

 Score =  313 bits (801), Expect = 6e-89
 Identities = 282/1100 (25%), Positives = 481/1100 (43%), Gaps = 103/1100 (9%)

Query: 3    ASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIK 62
            A F  L   T +S ++G    + +V       +  + + D+N++  +V+ +  A   G  
Sbjct: 5    AVFCELGARTNFSFLEGAAPAEEMVVFAKKAGLAGLGIADRNSVAGVVRAHAKAKVEGYP 64

Query: 63   PICGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWVAE 122
               GA L  ++  PD     I     N  G+ +L  L+S G +  ++ G   +    + E
Sbjct: 65   FQPGARLVFADGTPD-----ILAYPKNRRGWGHLCRLLSAGNLRSKK-GDCTLHLADLLE 118

Query: 123  ASEGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTNRPNDEEHLH 182
              E L+++    EG          P+  EVL     +   +R YL +       D     
Sbjct: 119  WQEELLLIVMQGEGR-------PEPESLEVLLGTLKEHAGNRLYLGLAPHYDGFDRHDFA 171

Query: 183  AAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYLKSA 242
               A+A K G  L+ATND  +         +    I E   +         + E++LK  
Sbjct: 172  VLAAIARKAGIGLLATNDALYHDPHYRPLADVVTSIREHVPIAGAGFLLQKNAERHLKGP 231

Query: 243  EEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGLEE 302
             EMA LFSD PEA+ N+ +  +     +    H  P+    DG T  E  R++  +G  E
Sbjct: 232  REMARLFSDYPEAIANTRKFFRELAFSLDELSHQYPD-ENADGETPAESLRRLVAEGAAE 290

Query: 303  RLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPVGP 362
            R    +P+      +  RQ+     ++EL++I    +  YFL V   +++A++  + +  
Sbjct: 291  RYPEGVPE------KVMRQI-----DYELELIHDKKYEPYFLTVHKLVKFARSVNI-LCQ 338

Query: 363  GRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYVAE 422
            GRGS A S V +   ITD+DP ++ LLF+RFL+ +R   PD DVDF  + R+ VI+Y+  
Sbjct: 339  GRGSAANSSVCFCLGITDVDPQKFTLLFDRFLSKDRDEPPDIDVDFEHERREEVIQYIYR 398

Query: 423  KYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEV-GMTLEKAYEQEE 481
             YG+          S  +++  R+VA    K++GL++ +   +   + G       E++ 
Sbjct: 399  TYGKEHAGLTAAVISYRSRSAGREVA----KAFGLSEDVQSALVSSIWGWGTSPFTEEQA 454

Query: 482  ILRDFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGGGLVT 541
                    D     +   A  L    R++ +H GG VI   +L +  PI         + 
Sbjct: 455  KGAGLDAADPLTRRVLAYASLLMNFPRHLSQHVGGFVITRDRLDEVVPIMNTAMPDRYMI 514

Query: 542  QFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDK-PTYT 600
            ++DKDD++   ++K D L L  LT +    K +         EP+ +A I  D +   Y 
Sbjct: 515  EWDKDDLDELKILKVDVLALGMLTCLAKGFKLLEAHYG----EPITLAEIYQDHRDAVYD 570

Query: 601  LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR 660
            ++ +A+T  VFQ+ESR    ++ +L+P  + DL+  VA+ RPGP+Q  MV  ++ R+  +
Sbjct: 571  MICRADTVGVFQIESRAQMSMLPRLQPREMYDLVIEVAIVRPGPIQGNMVHPYLKRREAQ 630

Query: 661  AE---LAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK- 716
                 + YP  +     LK VL  T G+ L+QEQ MQIA   AG++   AD LRRAM   
Sbjct: 631  RRGEAVVYPSPE-----LKAVLERTLGVPLFQEQAMQIAITAAGFSPSEADRLRRAMATF 685

Query: 717  KKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776
            K+   +       +EG   N+ + + A   F+ ++ F  YGF +SH+A++  + Y +AWL
Sbjct: 686  KRTGTIHTFERKMVEGMVANDYEREFAERCFNQIKGFGEYGFPESHAASFASLVYASAWL 745

Query: 777  KAHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVNDEG----- 831
            K +YP  F AA+L+A          L+ + R   +R+   D+N S++   +  EG     
Sbjct: 746  KTYYPDIFCAALLNAQPMGFYAPAQLVRDAREHGVRMLPVDINHSDWDALLEGEGAFDKN 805

Query: 832  -----------------RIIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKR 874
                              +  G   +KG+ +  ++A+   R +G ++ + D   R  L R
Sbjct: 806  AVHPRHASMREVIKTRKAVRLGFRLVKGLKQTDMKALVARRGEG-YRSVHDLWLRSGLSR 864

Query: 875  INKRTLDGLIRSGALDRLGPYFHDEPKAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDS 934
                          L+RL     D        +DR  A+      +   A E+      +
Sbjct: 865  ------------SVLERLA----DADAFRSIGLDRRAALWAVKALDEQSAVERLPLFEGA 908

Query: 935  GHADLFGGLFVEEDADVYGNHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFA 994
            G  D    L +E    +        ++   E++  +  TL L L  HP+     +  R  
Sbjct: 909  GSDD----LQIEPKVAL-------PDMPAGEQVIHDYRTLTLSLKAHPVSFMREDFSRRG 957

Query: 995  RQRIIDLKPARDTQ--TVAGMIIALRVMKNKKGDKMG--FITLDDRSGRIEASLFADAFH 1050
              R  DL      +  TVAG+++    ++ + G   G  F+T++D +G     ++   F 
Sbjct: 958  ILRSRDLAATATGRWVTVAGLVL----VRQRPGSANGVIFMTIEDETGIANIIVWEKTFQ 1013

Query: 1051 SAQSLLQTDAMVVVEGEVSN 1070
              +  +    +V V G + N
Sbjct: 1014 KYRRQVMGSRLVKVRGRLQN 1033