Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1169 a.a., DNA polymerase III subunit alpha from Sinorhizobium meliloti 1021

 Score =  793 bits (2048), Expect = 0.0
 Identities = 459/1133 (40%), Positives = 658/1133 (58%), Gaps = 83/1133 (7%)

Query: 5    FVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIKPI 64
            FVHLR+H+ YSL++G + +K ++   V  + PA+ + D NN+ + ++F + A   G++PI
Sbjct: 23   FVHLRVHSAYSLLEGALPLKKIIGKAVADDQPAIGIADTNNLFAALEFSQKAADDGLQPI 82

Query: 65   CGADLWLSNKDPDN-----------PLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSI 113
             G  L +  +D               L  I L+A    GY  L EL+SR +++G+ +   
Sbjct: 83   IGCQLSIDMEDEAEGERRGHAHQFVKLPAIVLIAATEDGYARLVELVSRAYLEGEGHQQT 142

Query: 114  IIEREWVAEA-SEGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRT 172
             I R W+A   + GLI L+ A  G + +AL  G+P  AE   K  +++F DR Y+E+QR 
Sbjct: 143  RISRSWLAAGGTTGLIALTGAGAGPVDMALKSGSPALAEARLKALIELFGDRLYVELQRH 202

Query: 173  NRPNDEEHLHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKN 232
                D  H +  + LA +L  PLVATN+  F    D++AH+  + +     + D  R + 
Sbjct: 203  GN-YDRRHENRMIDLAYRLDIPLVATNEAFFPSPSDYDAHDALMAVAHNAMVSDDSRFR- 260

Query: 233  YSEEQYLKSAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFP----IPDGMTI 288
             + + YLKS +EMA LF+DLPEALEN++E+A+RC+  +K     LP F      P+    
Sbjct: 261  LTPDHYLKSRKEMAALFADLPEALENTIEVARRCSFMLKTRGPILPRFTGASDDPEEAER 320

Query: 289  DEY--FRKVSFDGLEERLSVL--LPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFL 344
             E    R+ + +GLEERL+ L   P    EDY        +RL FEL +I +M FPGYFL
Sbjct: 321  AEVAELRRQAEEGLEERLAKLGMAPGYKEEDYR-------ERLAFELGVIQRMKFPGYFL 373

Query: 345  IVMDFIQWAKNNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDF 404
            IV DFI+WAK + +PVGPGRGSGAGSLVAY   ITD+DP+ + LLFERFLNPERVSMPDF
Sbjct: 374  IVADFIKWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPMRFSLLFERFLNPERVSMPDF 433

Query: 405  DVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKM 464
            D+DFC D R+ VI YV +KYGR  V+QIITFGS+ A+A +RDV RV    YG  D++ K+
Sbjct: 434  DIDFCQDRREEVIRYVQQKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKL 493

Query: 465  IPFEVG--MTLEKAYEQEEILRDFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPT 522
            +P        L KA E+E  LR+  + +   A + D+A+K+EG+ R+   HA G+VI   
Sbjct: 494  VPNNPANPTPLSKAIEEEPRLREEAEKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDR 553

Query: 523  KLTDFSPIYCDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVN 582
             L+   P+Y D      VTQF+   VE AGLVKFDFLGL+TLT++  A+  + +    + 
Sbjct: 554  PLSQLVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAIDFVGKRGIHI- 612

Query: 583  EEPLDIAFIPLDDKPTYTLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642
                D+A IPLDD  TY  L + ET  VFQ+ES GM++ +  ++PDC+ED+IALVAL+RP
Sbjct: 613  ----DLASIPLDDPKTYETLSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRP 668

Query: 643  GPLQSGMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGY 702
            GP+++  +  +  RKHG  E+   H    Y     +L  T G+I+YQEQVMQIAQV++GY
Sbjct: 669  GPMEN--IPVYNARKHGEEEIESIHPKIDY-----LLKETQGVIVYQEQVMQIAQVLSGY 721

Query: 703  TLGGADMLRRAMGKKKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSH 762
            +LG AD+LRRAMGKK   EM KQR  F++G   N +    A  IFDL+ KFA YGFNKSH
Sbjct: 722  SLGEADLLRRAMGKKIKAEMDKQRARFVDGAVKNGVSKPQADLIFDLLAKFANYGFNKSH 781

Query: 763  SAAYGLVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASE 822
            +AAY +VSYQTA++KAHYP  F+AA ++ DM NTDK+    ++   + +++ AP V  S 
Sbjct: 782  AAAYAIVSYQTAYMKAHYPVEFLAASMTLDMSNTDKINDFRQDAMRLGIQVVAPSVQTSH 841

Query: 823  FKFTVNDEGRIIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDG 882
              F   D  RI Y L A+KGVGE  V+ I   R D PF  L DFC R+D K +N+R  + 
Sbjct: 842  RHFETGD-NRIYYSLAALKGVGESAVDHIVAVRGDRPFASLEDFCLRIDPKLLNRRVFES 900

Query: 883  LIRSGALDRLGPYFHDEPKAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGG 942
            LI +GA D  G                +RA L+  ++  +  A++      SG +D+FG 
Sbjct: 901  LIAAGAFDCFG---------------YDRAELIGGLDRILGFAQRAQENKVSGQSDMFGA 945

Query: 943  LFVEEDADVYGNHRKAKELTL--------KERLKGEKDTLGLYLTGHPIDEYEGEIRRFA 994
                      G     +++ L         E+L  E   LG YL+ HP+D Y   + +  
Sbjct: 946  ----------GAATGPEKIALPPYTPWLASEKLHREFQVLGFYLSAHPLDTYNNLLAKMR 995

Query: 995  RQRIID----LKPARDTQTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFH 1050
             Q   D    +K       +AG + + +  K + G+KMG +   D SG+ EA LF++  +
Sbjct: 996  VQTFADFSAAVKKGAAAGRLAGTVTSKQERKTRTGNKMGIVAFSDASGQFEAVLFSEMLN 1055

Query: 1051 SAQSLLQTDAMVVVEGEVSNDDFSGGLRLRIKRVMSMEDARTNLAESLRLKVK 1103
              + LL+    +V+   V  ++   G+ LRI+ + S+E+    + ++LR+ V+
Sbjct: 1056 QYRDLLEPGKSLVM--TVDAEERPEGIGLRIRTLRSLEEESLQMQKALRVYVR 1106