Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1157 a.a., DNA polymerase III subunit alpha (RefSeq) from Shewanella amazonensis SB2B

 Score = 1333 bits (3449), Expect = 0.0
 Identities = 675/1171 (57%), Positives = 870/1171 (74%), Gaps = 22/1171 (1%)

Query: 5    FVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIKPI 64
            FVHLR+H+++S+ DGL ++KP++       M A+A+TDQNN+C LVKFY      GIKPI
Sbjct: 6    FVHLRVHSDFSMTDGLAKVKPILGKAEAEGMAAIALTDQNNLCGLVKFYSTCHDKGIKPI 65

Query: 65   CGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWVAEAS 124
             GAD W+     ++    +++LAM+  GY+NLT+LIS+ ++ GQ  G + I++EW+   +
Sbjct: 66   IGADFWMLVPGFEDEFCAVTVLAMDNEGYQNLTQLISQAYLRGQVQGRVAIDQEWLLTYN 125

Query: 125  EGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTNRPNDEEHLHAA 184
             G+++LS AKEG++G AL+ GN  +A  L + + + FPDR+++E+ RT R ++E +LH A
Sbjct: 126  SGILLLSGAKEGDLGKALIKGNAAQAASLTQFYQKHFPDRYFIELIRTGRADEETYLHMA 185

Query: 185  VALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYLKSAEE 244
            V  A ++G P+VATN V F+  EDFEAHE RV I +G  L D RR K YSE+QYL+S +E
Sbjct: 186  VKHAAEVGLPVVATNQVVFLSPEDFEAHEIRVAIHDGFTLADNRRPKKYSEQQYLRSEDE 245

Query: 245  MAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGLEERL 304
            M ELFSD+PEA+EN+VEIAKRCN+ V+LG++FLPNFP  +  T D +  + S +GLEERL
Sbjct: 246  MCELFSDIPEAIENTVEIAKRCNVTVRLGEYFLPNFPTGELSTAD-FLVERSKEGLEERL 304

Query: 305  SVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPVGPGR 364
              L P D  E  E KR+ Y +RL+ EL +I QMGFPGYFLIVM+FIQW K+NG+PVGPGR
Sbjct: 305  EFLFP-DPAERAE-KRKEYDERLDIELQVINQMGFPGYFLIVMEFIQWGKDNGIPVGPGR 362

Query: 365  GSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYVAEKY 424
            GSGAGSLVAY  KITDLDPLE+DLLFERFLNPERVSMPDFDVDFCMD RD VI++VAE Y
Sbjct: 363  GSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAELY 422

Query: 425  GRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQEEILR 484
            GR AVSQIITFG+MAAKAV+RDV RV G SYG  DR+SKMIP E GMTL KA+E E  L+
Sbjct: 423  GREAVSQIITFGTMAAKAVVRDVGRVLGHSYGFVDRISKMIPPEPGMTLAKAFEVEPGLQ 482

Query: 485  DFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGGGLVTQFD 544
            +    DEE  ++ DMARKLEGV RN GKHAGGVVIAPTK+TDFSP+YCD EG   VTQFD
Sbjct: 483  EAYDADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTKITDFSPLYCDAEGKNPVTQFD 542

Query: 545  KDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDKPTYTLLQK 604
            K+DVE AGLVKFDFLGLRTLTIIDWAL  IN   AK+ + P+DIA IPLDD  ++++L++
Sbjct: 543  KNDVEYAGLVKFDFLGLRTLTIIDWALGMINPRLAKLGKPPVDIAAIPLDDSKSFSVLKR 602

Query: 605  AETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRAELA 664
             ETTAVFQLESRGMK+LIK+L+PDC ED+IALVALFRPGPLQSGMVD+FI+RKHG  E++
Sbjct: 603  YETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGHEEIS 662

Query: 665  YPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPEEMAK 724
            YP + +Q+E LKP+L PTYGIILYQEQVMQIAQ +AGYTLGGADMLRRAMGKKKPEEMAK
Sbjct: 663  YPDATWQHESLKPILEPTYGIILYQEQVMQIAQTLAGYTLGGADMLRRAMGKKKPEEMAK 722

Query: 725  QRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHYPAPF 784
            QR GF  G   N +D +LA  IFDLVEKFAGYGFNKSHSAAY LVSYQT WLK H+P+ F
Sbjct: 723  QRAGFEAGSVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHFPSEF 782

Query: 785  MAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVNDEGRIIYGLGAIKGVG 844
            MAAV+SADM NTDK+VTL++E   M L++  PDVN   FKFTV+++  I+YG+GAIKGVG
Sbjct: 783  MAAVMSADMDNTDKIVTLVDECDRMGLKIIPPDVNKGLFKFTVDEDLNIVYGIGAIKGVG 842

Query: 845  EGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGPYFHDEPKAYQ 904
            EGPVEAI EAR+DGPF DLFDFCAR+DLK++NKR ++ LI SGALD LGP+         
Sbjct: 843  EGPVEAILEARKDGPFTDLFDFCARIDLKKLNKRVIEKLIYSGALDSLGPH--------- 893

Query: 905  ANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDADVYGNHRKAKELTLK 964
                  RA ++  + EA++AA+Q A+   +G  D+F GL  ++  D      +      K
Sbjct: 894  ------RASMMATLPEAMQAADQHAKAQATGQHDMF-GLLNDDQQDEKQQFVECTPWPDK 946

Query: 965  ERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQTV--AGMIIALRVMKN 1022
              L+GE++TLGLYLTGHPI++Y  E++ +   R+ D+ P    +TV  AG+++A RVM  
Sbjct: 947  IWLEGERETLGLYLTGHPINQYLKELKNYTSGRLKDIHPTERGKTVKAAGLVVASRVMLT 1006

Query: 1023 KKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEVSNDDFSGGLRLRIK 1082
            K+G KMG +TLDD+S R+E  LF +AF     LL+ D +++ EGEVS DDFSGG R+  +
Sbjct: 1007 KRGSKMGLLTLDDKSARLEVMLFTEAFEKFGHLLEKDRILICEGEVSFDDFSGGNRMTAR 1066

Query: 1083 RVMSMEDARTNLAESLRLKVKTEALKGDQL-RWLGELLKRHRGACPVTMEYTGSDAKAML 1141
             ++ + +AR++ A++L + + ++      L ++   +     GA P+ + ++ +DA   L
Sbjct: 1067 NIIDISEARSHFAKALEVDLASQQATEAMLDKFFDVITPWKGGAVPLIVNFSRADASGRL 1126

Query: 1142 QFGETWRIDPADGLIQALRDQFGRDNVFLQY 1172
            Q G+ WR+DP+D L+ AL+   G D + +Q+
Sbjct: 1127 QLGDDWRVDPSDDLVLALQTLIGPDKIRIQF 1157